miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11368 3' -56.9 NC_003084.1 + 37934 0.66 0.800198
Target:  5'- uUGUGGGgCCCACAuuuGcGGugCUa -3'
miRNA:   3'- uACACCCgGGGUGUuuuCaCCugGGc -5'
11368 3' -56.9 NC_003084.1 + 63933 0.66 0.800198
Target:  5'- --uUGGGCCCC-----AGUGGAaaCCCGu -3'
miRNA:   3'- uacACCCGGGGuguuuUCACCU--GGGC- -5'
11368 3' -56.9 NC_003084.1 + 24111 0.66 0.781507
Target:  5'- --aUGGGUUCC-C-AAAGUGGugCCGa -3'
miRNA:   3'- uacACCCGGGGuGuUUUCACCugGGC- -5'
11368 3' -56.9 NC_003084.1 + 91551 0.66 0.771945
Target:  5'- -aGUuGGCCUCGCAGuuGUGGugUUGg -3'
miRNA:   3'- uaCAcCCGGGGUGUUuuCACCugGGC- -5'
11368 3' -56.9 NC_003084.1 + 70286 0.66 0.76225
Target:  5'- -gGUGGGCCCCgACAu-GGUG-ACCa- -3'
miRNA:   3'- uaCACCCGGGG-UGUuuUCACcUGGgc -5'
11368 3' -56.9 NC_003084.1 + 5853 0.67 0.742508
Target:  5'- ---cGGGCCCCGCAucAGGUGcuccucGGCCaCGg -3'
miRNA:   3'- uacaCCCGGGGUGUu-UUCAC------CUGG-GC- -5'
11368 3' -56.9 NC_003084.1 + 17068 0.67 0.732479
Target:  5'- ---cGGGCUCauCGGAGGUGGACUCGu -3'
miRNA:   3'- uacaCCCGGGguGUUUUCACCUGGGC- -5'
11368 3' -56.9 NC_003084.1 + 53888 0.67 0.712157
Target:  5'- -cGUGGGCUUCACc--AGUGcGAuCCCGa -3'
miRNA:   3'- uaCACCCGGGGUGuuuUCAC-CU-GGGC- -5'
11368 3' -56.9 NC_003084.1 + 75596 0.67 0.709081
Target:  5'- aAUGUuGGCCcaagaauugcgcccCCACucuAGUGGACCCa -3'
miRNA:   3'- -UACAcCCGG--------------GGUGuuuUCACCUGGGc -5'
11368 3' -56.9 NC_003084.1 + 28225 0.68 0.681159
Target:  5'- ---gGGGCUgCAUAugGGUGGACaCCGa -3'
miRNA:   3'- uacaCCCGGgGUGUuuUCACCUG-GGC- -5'
11368 3' -56.9 NC_003084.1 + 94142 0.68 0.681159
Target:  5'- cGUGUuGGCCCUuuGguGAGGUGGACCg- -3'
miRNA:   3'- -UACAcCCGGGG--UguUUUCACCUGGgc -5'
11368 3' -56.9 NC_003084.1 + 65942 0.68 0.639275
Target:  5'- aAUGUGGGCUCCACGuugaa--GCCCGg -3'
miRNA:   3'- -UACACCCGGGGUGUuuucaccUGGGC- -5'
11368 3' -56.9 NC_003084.1 + 60437 0.69 0.618261
Target:  5'- aAUGUGaGCCCCaccgcuGCAGAAcGUGGGCCUu -3'
miRNA:   3'- -UACACcCGGGG------UGUUUU-CACCUGGGc -5'
11368 3' -56.9 NC_003084.1 + 51318 0.71 0.466022
Target:  5'- uUGUGGGCCgUgguUGAAGGUGGACCgGu -3'
miRNA:   3'- uACACCCGGgGu--GUUUUCACCUGGgC- -5'
11368 3' -56.9 NC_003084.1 + 80841 0.72 0.410557
Target:  5'- -gGUGGGCCUCACc-----GGACCCGa -3'
miRNA:   3'- uaCACCCGGGGUGuuuucaCCUGGGC- -5'
11368 3' -56.9 NC_003084.1 + 51417 0.76 0.258093
Target:  5'- -cGUGGGCCCgGguUGAAGGUGGACCgGu -3'
miRNA:   3'- uaCACCCGGGgU--GUUUUCACCUGGgC- -5'
11368 3' -56.9 NC_003084.1 + 68703 0.78 0.190949
Target:  5'- ----cGGCCCCACAAAAGUuGACCCGa -3'
miRNA:   3'- uacacCCGGGGUGUUUUCAcCUGGGC- -5'
11368 3' -56.9 NC_003084.1 + 49228 0.85 0.061841
Target:  5'- ----cGGCCCCACGAAAGUGGACCCu -3'
miRNA:   3'- uacacCCGGGGUGUUUUCACCUGGGc -5'
11368 3' -56.9 NC_003084.1 + 68523 0.86 0.053837
Target:  5'- -cGacGGCCCCACGAAAGUGGACCCa -3'
miRNA:   3'- uaCacCCGGGGUGUUUUCACCUGGGc -5'
11368 3' -56.9 NC_003084.1 + 49482 0.86 0.053836
Target:  5'- ----cGGCCCCACGAAAGUGGACCCa -3'
miRNA:   3'- uacacCCGGGGUGUUUUCACCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.