miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11372 5' -43.4 NC_003084.1 + 72113 0.66 0.999997
Target:  5'- cGCUGCAGAaccgacguUGgugAGCGCCGCc---- -3'
miRNA:   3'- uCGAUGUUU--------ACaa-UCGUGGUGuuuac -5'
11372 5' -43.4 NC_003084.1 + 28226 0.66 0.999997
Target:  5'- gGGCUGCAuAUGggUGGaCACCGau-AUGa -3'
miRNA:   3'- -UCGAUGUuUACa-AUC-GUGGUguuUAC- -5'
11372 5' -43.4 NC_003084.1 + 11074 0.66 0.999997
Target:  5'- aAGCUaaaGCGGauuGUGggGGCAaguaCACGGAUGa -3'
miRNA:   3'- -UCGA---UGUU---UACaaUCGUg---GUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 46559 0.66 0.999995
Target:  5'- -uCUACAGAUGUUGGC-CCAg----- -3'
miRNA:   3'- ucGAUGUUUACAAUCGuGGUguuuac -5'
11372 5' -43.4 NC_003084.1 + 1497 0.66 0.999995
Target:  5'- cAGCUccaAAAUGUUGaCACCACAGc-- -3'
miRNA:   3'- -UCGAug-UUUACAAUcGUGGUGUUuac -5'
11372 5' -43.4 NC_003084.1 + 55350 0.66 0.999993
Target:  5'- gAGCUGCAAAauuu-GCACCGCcAGUu -3'
miRNA:   3'- -UCGAUGUUUacaauCGUGGUGuUUAc -5'
11372 5' -43.4 NC_003084.1 + 26466 0.67 0.999986
Target:  5'- gGGCUcGCGAGUG-UGGCAaauuugcUCGCGGAUGc -3'
miRNA:   3'- -UCGA-UGUUUACaAUCGU-------GGUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 107907 0.67 0.999986
Target:  5'- cAGUUACccAAcgGUUGGCACC-CGGAc- -3'
miRNA:   3'- -UCGAUG--UUuaCAAUCGUGGuGUUUac -5'
11372 5' -43.4 NC_003084.1 + 70638 0.67 0.999986
Target:  5'- gAGCUGCAcGUGUUcaaAGC-CCACu---- -3'
miRNA:   3'- -UCGAUGUuUACAA---UCGuGGUGuuuac -5'
11372 5' -43.4 NC_003084.1 + 97763 0.67 0.999984
Target:  5'- cGCUACGGuccacaucGCACCGCGGAUa -3'
miRNA:   3'- uCGAUGUUuacaau--CGUGGUGUUUAc -5'
11372 5' -43.4 NC_003084.1 + 31960 0.67 0.99998
Target:  5'- cAGUUGCcggacucgGUUGGCACCACcGcgGg -3'
miRNA:   3'- -UCGAUGuuua----CAAUCGUGGUGuUuaC- -5'
11372 5' -43.4 NC_003084.1 + 105238 0.67 0.99998
Target:  5'- gAGgUGCAGGUGaagguuucGCGCCACcAGAUGg -3'
miRNA:   3'- -UCgAUGUUUACaau-----CGUGGUG-UUUAC- -5'
11372 5' -43.4 NC_003084.1 + 87201 0.67 0.999972
Target:  5'- gAGaCUGaaaGGAUGggucgUGGCACCGCGGAa- -3'
miRNA:   3'- -UC-GAUg--UUUACa----AUCGUGGUGUUUac -5'
11372 5' -43.4 NC_003084.1 + 12991 0.68 0.999928
Target:  5'- uAGCUGC-AAUGUUuGCGuCCACAc--- -3'
miRNA:   3'- -UCGAUGuUUACAAuCGU-GGUGUuuac -5'
11372 5' -43.4 NC_003084.1 + 68984 0.68 0.999928
Target:  5'- aAGUUuaaAAAUGUgAGCACCACucAUGu -3'
miRNA:   3'- -UCGAug-UUUACAaUCGUGGUGuuUAC- -5'
11372 5' -43.4 NC_003084.1 + 8590 0.68 0.999928
Target:  5'- -uCUGC-GGUGcUAGCACCACAGGa- -3'
miRNA:   3'- ucGAUGuUUACaAUCGUGGUGUUUac -5'
11372 5' -43.4 NC_003084.1 + 49071 0.68 0.999903
Target:  5'- cGCgACgAAAUGUUAGCACCguauACGGAg- -3'
miRNA:   3'- uCGaUG-UUUACAAUCGUGG----UGUUUac -5'
11372 5' -43.4 NC_003084.1 + 58356 0.68 0.999871
Target:  5'- -uUUACGauGAUGUUGGCgcGCCGCAAAUc -3'
miRNA:   3'- ucGAUGU--UUACAAUCG--UGGUGUUUAc -5'
11372 5' -43.4 NC_003084.1 + 38639 0.68 0.999829
Target:  5'- cGGUUcccGCGGGUGUgcAGC-CCACAAAUGc -3'
miRNA:   3'- -UCGA---UGUUUACAa-UCGuGGUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 78166 0.69 0.999776
Target:  5'- ---aACGAAUGUUAGCGCaaaACAGAc- -3'
miRNA:   3'- ucgaUGUUUACAAUCGUGg--UGUUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.