miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 8787 0.66 0.547311
Target:  5'- -gUCcCCCUGCGC--CGGCGGCU-CCg -3'
miRNA:   3'- cgAGcGGGACGUGaaGCUGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 40979 0.66 0.547311
Target:  5'- gGCggGCCa-GCGCcUCGGCGGCCuuCu -3'
miRNA:   3'- -CGagCGGgaCGUGaAGCUGCCGGugG- -5'
11403 3' -58.1 NC_003085.1 + 27864 0.66 0.547311
Target:  5'- cGCUCGCgCCacGCAUgaUGuCGGCCAUg -3'
miRNA:   3'- -CGAGCG-GGa-CGUGaaGCuGCCGGUGg -5'
11403 3' -58.1 NC_003085.1 + 37266 0.66 0.557897
Target:  5'- aGUUCGCCgggaaGCGC-UCGACGucgcCCACCu -3'
miRNA:   3'- -CGAGCGGga---CGUGaAGCUGCc---GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40537 0.66 0.568541
Target:  5'- --aCGCgCUGCACUUCGGaGGCguCg -3'
miRNA:   3'- cgaGCGgGACGUGAAGCUgCCGguGg -5'
11403 3' -58.1 NC_003085.1 + 47509 0.67 0.455659
Target:  5'- uGUcCGCCaCUGCGau---ACGGCCACCg -3'
miRNA:   3'- -CGaGCGG-GACGUgaagcUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 23334 0.67 0.505674
Target:  5'- cGCUCuggccgGCCaaGCGC--CGcCGGCCGCCg -3'
miRNA:   3'- -CGAG------CGGgaCGUGaaGCuGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 8179 0.67 0.502604
Target:  5'- uGCUUGCgCaGCGCUucggcgucucggugUCGACGGUCGaauCCa -3'
miRNA:   3'- -CGAGCGgGaCGUGA--------------AGCUGCCGGU---GG- -5'
11403 3' -58.1 NC_003085.1 + 40644 0.67 0.502604
Target:  5'- -gUCGCCCUGaCGCUggcugCGcCGcgcaaccucgcggaGCCGCCg -3'
miRNA:   3'- cgAGCGGGAC-GUGAa----GCuGC--------------CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 28042 0.67 0.505674
Target:  5'- aGgUCGUUCUGCGCggccUCGGacagcaGGCgGCCg -3'
miRNA:   3'- -CgAGCGGGACGUGa---AGCUg-----CCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 35389 0.67 0.505674
Target:  5'- gGCggaGUCCgagGCGCUcgcagauggccUCGACGGacaCGCCg -3'
miRNA:   3'- -CGag-CGGGa--CGUGA-----------AGCUGCCg--GUGG- -5'
11403 3' -58.1 NC_003085.1 + 37921 0.67 0.495473
Target:  5'- cGCagGCCCcgGCGC-UCGACGaacgcGCgGCCg -3'
miRNA:   3'- -CGagCGGGa-CGUGaAGCUGC-----CGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 47445 0.67 0.455659
Target:  5'- uGCUCcauGUCCUGCGCgucgaagUCGAacCGGuCCGCg -3'
miRNA:   3'- -CGAG---CGGGACGUGa------AGCU--GCC-GGUGg -5'
11403 3' -58.1 NC_003085.1 + 37842 0.67 0.455659
Target:  5'- cCUUGCCCUgguaGCGCUgccugCGcUGGCCgGCCa -3'
miRNA:   3'- cGAGCGGGA----CGUGAa----GCuGCCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 33612 0.67 0.465455
Target:  5'- --aCGCCaacgGC-CUUCGAagucugGGCCACCa -3'
miRNA:   3'- cgaGCGGga--CGuGAAGCUg-----CCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 30668 0.67 0.475358
Target:  5'- gGCagggCGCUCUGCGCcUCGcauUGGCUGCUg -3'
miRNA:   3'- -CGa---GCGGGACGUGaAGCu--GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 24343 0.67 0.482353
Target:  5'- cGCggCGCUCUacggcgacgggacgGC-CUUUGGCGGCCggGCCa -3'
miRNA:   3'- -CGa-GCGGGA--------------CGuGAAGCUGCCGG--UGG- -5'
11403 3' -58.1 NC_003085.1 + 5832 0.67 0.485366
Target:  5'- gGCgucaGCCCUGCagguccgggACUggGACGG-CACCg -3'
miRNA:   3'- -CGag--CGGGACG---------UGAagCUGCCgGUGG- -5'
11403 3' -58.1 NC_003085.1 + 25240 0.67 0.495473
Target:  5'- cGC-CGCCCuggUGCGCUccgCGGCGGgCGUCg -3'
miRNA:   3'- -CGaGCGGG---ACGUGAa--GCUGCCgGUGG- -5'
11403 3' -58.1 NC_003085.1 + 46483 0.67 0.505674
Target:  5'- gGUUC-CCaCUGCGCgcUCGACGaaaCCACCg -3'
miRNA:   3'- -CGAGcGG-GACGUGa-AGCUGCc--GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.