miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 14542 0.66 0.515964
Target:  5'- cGCgUGCgCCUGCAUccacUCGuaGGCCGCCa -3'
miRNA:   3'- -CGaGCG-GGACGUGa---AGCugCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 14946 0.69 0.39042
Target:  5'- aCUCGCggaaCUGCGCgaagCGcuGCGGcCCACCu -3'
miRNA:   3'- cGAGCGg---GACGUGaa--GC--UGCC-GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 15605 0.68 0.445977
Target:  5'- -gUCGCCgUGCAgUUgacuaCGugGGCCggugGCCg -3'
miRNA:   3'- cgAGCGGgACGUgAA-----GCugCCGG----UGG- -5'
11403 3' -58.1 NC_003085.1 + 17030 0.66 0.513899
Target:  5'- uGCUCGCguaugacgccaaccuCCggaGCUUCGAgggcgucgagaaguaCGGCCGCCc -3'
miRNA:   3'- -CGAGCG---------------GGacgUGAAGCU---------------GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 18533 0.72 0.233015
Target:  5'- gGCU-GCCUgucGCACcuucucguaugCGACGGCCGCCa -3'
miRNA:   3'- -CGAgCGGGa--CGUGaa---------GCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 18804 0.67 0.465455
Target:  5'- cGCagagCGCCCUGcCGCagCGACucGCCACg -3'
miRNA:   3'- -CGa---GCGGGAC-GUGaaGCUGc-CGGUGg -5'
11403 3' -58.1 NC_003085.1 + 19433 0.68 0.417636
Target:  5'- uGCUgGCCCUGgaagcCGCggaCGACgucgccaaGGCCGCCc -3'
miRNA:   3'- -CGAgCGGGAC-----GUGaa-GCUG--------CCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 21570 0.71 0.265924
Target:  5'- uGgaCGCCCUGCACcaggUGACGGgCAUg -3'
miRNA:   3'- -CgaGCGGGACGUGaa--GCUGCCgGUGg -5'
11403 3' -58.1 NC_003085.1 + 21616 0.68 0.426961
Target:  5'- cGCgagCGaCCC-GCGCga-GACGGCCAUg -3'
miRNA:   3'- -CGa--GC-GGGaCGUGaagCUGCCGGUGg -5'
11403 3' -58.1 NC_003085.1 + 21901 0.67 0.485366
Target:  5'- --gUGCCCUGCcagAUggCGACGucaccGCCGCCg -3'
miRNA:   3'- cgaGCGGGACG---UGaaGCUGC-----CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 23228 0.66 0.526337
Target:  5'- uGCUCcagacgGCCgCcGCGCUUCGcacCGcGCCGCCc -3'
miRNA:   3'- -CGAG------CGG-GaCGUGAAGCu--GC-CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 23334 0.67 0.505674
Target:  5'- cGCUCuggccgGCCaaGCGC--CGcCGGCCGCCg -3'
miRNA:   3'- -CGAG------CGGgaCGUGaaGCuGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 23422 0.74 0.175112
Target:  5'- cGCUCGCCCUGCucCUUCaacugcuGGCGcagcGUCGCCa -3'
miRNA:   3'- -CGAGCGGGACGu-GAAG-------CUGC----CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 24128 0.67 0.465455
Target:  5'- aGCgcgCGCCaucCACcuugUCGGUGGCCACCa -3'
miRNA:   3'- -CGa--GCGGgacGUGa---AGCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 24343 0.67 0.482353
Target:  5'- cGCggCGCUCUacggcgacgggacgGC-CUUUGGCGGCCggGCCa -3'
miRNA:   3'- -CGa-GCGGGA--------------CGuGAAGCUGCCGG--UGG- -5'
11403 3' -58.1 NC_003085.1 + 25240 0.67 0.495473
Target:  5'- cGC-CGCCCuggUGCGCUccgCGGCGGgCGUCg -3'
miRNA:   3'- -CGaGCGGG---ACGUGAa--GCUGCCgGUGG- -5'
11403 3' -58.1 NC_003085.1 + 25277 0.7 0.339585
Target:  5'- gGCgCGCCCgucuaccuCACcgCGACGGCCgGCCa -3'
miRNA:   3'- -CGaGCGGGac------GUGaaGCUGCCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 25558 0.74 0.17558
Target:  5'- uGCUCGCgacuuUCUGCGCgUgGACGGCUGCUg -3'
miRNA:   3'- -CGAGCG-----GGACGUGaAgCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 25691 0.75 0.145415
Target:  5'- aUUCGCCCaUGcCGCUUCGA-GGCUGCCu -3'
miRNA:   3'- cGAGCGGG-AC-GUGAAGCUgCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 26105 0.71 0.293725
Target:  5'- uGCUgGggCUGCGCcUCGGCGGCCGgCg -3'
miRNA:   3'- -CGAgCggGACGUGaAGCUGCCGGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.