miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 37921 0.67 0.495473
Target:  5'- cGCagGCCCcgGCGC-UCGACGaacgcGCgGCCg -3'
miRNA:   3'- -CGagCGGGa-CGUGaAGCUGC-----CGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 37842 0.67 0.455659
Target:  5'- cCUUGCCCUgguaGCGCUgccugCGcUGGCCgGCCa -3'
miRNA:   3'- cGAGCGGGA----CGUGAa----GCuGCCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 37266 0.66 0.557897
Target:  5'- aGUUCGCCgggaaGCGC-UCGACGucgcCCACCu -3'
miRNA:   3'- -CGAGCGGga---CGUGaAGCUGCc---GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 37134 0.69 0.372932
Target:  5'- --aCGCCggGCACggCGACGGCgggCACCc -3'
miRNA:   3'- cgaGCGGgaCGUGaaGCUGCCG---GUGG- -5'
11403 3' -58.1 NC_003085.1 + 35828 0.66 0.536789
Target:  5'- uGCUCGCCgaGCGCcugCGACucagucguGCC-CCa -3'
miRNA:   3'- -CGAGCGGgaCGUGaa-GCUGc-------CGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 35688 0.66 0.526338
Target:  5'- cGCUCGCCUUGaaCGCcgaccagugUUCGuccaACGGCCucCCg -3'
miRNA:   3'- -CGAGCGGGAC--GUG---------AAGC----UGCCGGu-GG- -5'
11403 3' -58.1 NC_003085.1 + 35389 0.67 0.505674
Target:  5'- gGCggaGUCCgagGCGCUcgcagauggccUCGACGGacaCGCCg -3'
miRNA:   3'- -CGag-CGGGa--CGUGA-----------AGCUGCCg--GUGG- -5'
11403 3' -58.1 NC_003085.1 + 34417 0.69 0.399363
Target:  5'- gGCUUugGCCCUGgGCUgCGGCuugGGCCgGCCc -3'
miRNA:   3'- -CGAG--CGGGACgUGAaGCUG---CCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 34259 0.66 0.54731
Target:  5'- cCUCGCCCUuCACaggGACGuagcaGCCGCCc -3'
miRNA:   3'- cGAGCGGGAcGUGaagCUGC-----CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 34254 0.68 0.408436
Target:  5'- cCUCGCCCacuuccgcgGCGCggCGcUGGCgCACCg -3'
miRNA:   3'- cGAGCGGGa--------CGUGaaGCuGCCG-GUGG- -5'
11403 3' -58.1 NC_003085.1 + 33612 0.67 0.465455
Target:  5'- --aCGCCaacgGC-CUUCGAagucugGGCCACCa -3'
miRNA:   3'- cgaGCGGga--CGuGAAGCUg-----CCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 32100 0.68 0.417636
Target:  5'- uGCUCGCUggcgUUGCACUgaGGUGGCuCGCCa -3'
miRNA:   3'- -CGAGCGG----GACGUGAagCUGCCG-GUGG- -5'
11403 3' -58.1 NC_003085.1 + 31218 0.66 0.526337
Target:  5'- -aUCGCCUcGgACaUCGGCGuGUCGCCu -3'
miRNA:   3'- cgAGCGGGaCgUGaAGCUGC-CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 31140 0.66 0.515964
Target:  5'- cGCgUUGCggCUGCcCUUCgGACGGCCAgCg -3'
miRNA:   3'- -CG-AGCGg-GACGuGAAG-CUGCCGGUgG- -5'
11403 3' -58.1 NC_003085.1 + 30668 0.67 0.475358
Target:  5'- gGCagggCGCUCUGCGCcUCGcauUGGCUGCUg -3'
miRNA:   3'- -CGa---GCGGGACGUGaAGCu--GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 28718 0.77 0.120052
Target:  5'- cGCUgGCCCUGCGCUUCGGCuuccGUgagacgCACCg -3'
miRNA:   3'- -CGAgCGGGACGUGAAGCUGc---CG------GUGG- -5'
11403 3' -58.1 NC_003085.1 + 28589 0.71 0.293725
Target:  5'- cGUaUGCCUUGCGCUggGugGGCggCACCg -3'
miRNA:   3'- -CGaGCGGGACGUGAagCugCCG--GUGG- -5'
11403 3' -58.1 NC_003085.1 + 28042 0.67 0.505674
Target:  5'- aGgUCGUUCUGCGCggccUCGGacagcaGGCgGCCg -3'
miRNA:   3'- -CgAGCGGGACGUGa---AGCUg-----CCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 27864 0.66 0.547311
Target:  5'- cGCUCGCgCCacGCAUgaUGuCGGCCAUg -3'
miRNA:   3'- -CGAGCG-GGa-CGUGaaGCuGCCGGUGg -5'
11403 3' -58.1 NC_003085.1 + 27266 0.75 0.157717
Target:  5'- aGgUCGCCCUGCACcu---CGGCCugCa -3'
miRNA:   3'- -CgAGCGGGACGUGaagcuGCCGGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.