miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 48900 1.03 0.001298
Target:  5'- gGC-CGCCCUGCACUUCGACGGCCACCc -3'
miRNA:   3'- -CGaGCGGGACGUGAAGCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 47720 0.69 0.396666
Target:  5'- uGCUgCGCCUgcugacgggcgcggUGCGCguagcgucgcaaUUCGACGGCCAg- -3'
miRNA:   3'- -CGA-GCGGG--------------ACGUG------------AAGCUGCCGGUgg -5'
11403 3' -58.1 NC_003085.1 + 47509 0.67 0.455659
Target:  5'- uGUcCGCCaCUGCGau---ACGGCCACCg -3'
miRNA:   3'- -CGaGCGG-GACGUgaagcUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 47445 0.67 0.455659
Target:  5'- uGCUCcauGUCCUGCGCgucgaagUCGAacCGGuCCGCg -3'
miRNA:   3'- -CGAG---CGGGACGUGa------AGCU--GCC-GGUGg -5'
11403 3' -58.1 NC_003085.1 + 46692 0.66 0.515964
Target:  5'- cGC-CGCCgCUGCcuGCUUC--CGGCCAgCg -3'
miRNA:   3'- -CGaGCGG-GACG--UGAAGcuGCCGGUgG- -5'
11403 3' -58.1 NC_003085.1 + 46483 0.67 0.505674
Target:  5'- gGUUC-CCaCUGCGCgcUCGACGaaaCCACCg -3'
miRNA:   3'- -CGAGcGG-GACGUGa-AGCUGCc--GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 45878 0.66 0.515964
Target:  5'- aGUUCGCcgCCUcggcagcgaggcGCGCUUgCGccCGGCCGCCu -3'
miRNA:   3'- -CGAGCG--GGA------------CGUGAA-GCu-GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 45648 0.69 0.399363
Target:  5'- uGCUCGCCgUGCACaacaucgCGAacgcuccgaGGCCcCCc -3'
miRNA:   3'- -CGAGCGGgACGUGaa-----GCUg--------CCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 44286 0.77 0.104522
Target:  5'- cGC-CGCCCUGC-CUUCcgcgccagGAUGGCCGCUg -3'
miRNA:   3'- -CGaGCGGGACGuGAAG--------CUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 43181 0.66 0.557897
Target:  5'- cGCUccacCGCCgCgcgGUACUUCG-CGGCguCCu -3'
miRNA:   3'- -CGA----GCGG-Ga--CGUGAAGCuGCCGguGG- -5'
11403 3' -58.1 NC_003085.1 + 42366 0.66 0.557897
Target:  5'- cGCUCGCgCaUGC-CcUCGGCGGCaugaGCg -3'
miRNA:   3'- -CGAGCGgG-ACGuGaAGCUGCCGg---UGg -5'
11403 3' -58.1 NC_003085.1 + 41708 0.72 0.259315
Target:  5'- gGCUCGCUCa-CGCUUC-ACGGCCuCCa -3'
miRNA:   3'- -CGAGCGGGacGUGAAGcUGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 41316 0.67 0.455659
Target:  5'- cGUUCGCCUgaUGCGCggcgcUUGAgcaGGuCCACCa -3'
miRNA:   3'- -CGAGCGGG--ACGUGa----AGCUg--CC-GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40979 0.66 0.547311
Target:  5'- gGCggGCCa-GCGCcUCGGCGGCCuuCu -3'
miRNA:   3'- -CGagCGGgaCGUGaAGCUGCCGGugG- -5'
11403 3' -58.1 NC_003085.1 + 40826 0.7 0.347715
Target:  5'- gGC-CGgCCUGUACc-UGACGGCgGCCg -3'
miRNA:   3'- -CGaGCgGGACGUGaaGCUGCCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 40644 0.67 0.502604
Target:  5'- -gUCGCCCUGaCGCUggcugCGcCGcgcaaccucgcggaGCCGCCg -3'
miRNA:   3'- cgAGCGGGAC-GUGAa----GCuGC--------------CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40608 0.66 0.526337
Target:  5'- gGCgaggGgCCUGUGCU--GACGGCCGCUg -3'
miRNA:   3'- -CGag--CgGGACGUGAagCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40537 0.66 0.568541
Target:  5'- --aCGCgCUGCACUUCGGaGGCguCg -3'
miRNA:   3'- cgaGCGgGACGUGAAGCUgCCGguGg -5'
11403 3' -58.1 NC_003085.1 + 38293 0.66 0.526337
Target:  5'- aGCUCggGCUUUGC-CUgUGACGGCCAg- -3'
miRNA:   3'- -CGAG--CGGGACGuGAaGCUGCCGGUgg -5'
11403 3' -58.1 NC_003085.1 + 38221 0.68 0.445976
Target:  5'- gGCUCGUgcaCUcucgacggcaGCACgUCGGCGGUgGCCa -3'
miRNA:   3'- -CGAGCGg--GA----------CGUGaAGCUGCCGgUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.