miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 48900 1.03 0.001298
Target:  5'- gGC-CGCCCUGCACUUCGACGGCCACCc -3'
miRNA:   3'- -CGaGCGGGACGUGAAGCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 26974 0.78 0.098855
Target:  5'- aGCUCGgCCUGCGCagcCGGCugGGCUACCg -3'
miRNA:   3'- -CGAGCgGGACGUGaa-GCUG--CCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 44286 0.77 0.104522
Target:  5'- cGC-CGCCCUGC-CUUCcgcgccagGAUGGCCGCUg -3'
miRNA:   3'- -CGaGCGGGACGuGAAG--------CUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 28718 0.77 0.120052
Target:  5'- cGCUgGCCCUGCGCUUCGGCuuccGUgagacgCACCg -3'
miRNA:   3'- -CGAgCGGGACGUGAAGCUGc---CG------GUGG- -5'
11403 3' -58.1 NC_003085.1 + 25691 0.75 0.145415
Target:  5'- aUUCGCCCaUGcCGCUUCGA-GGCUGCCu -3'
miRNA:   3'- cGAGCGGG-AC-GUGAAGCUgCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 27266 0.75 0.157717
Target:  5'- aGgUCGCCCUGCACcu---CGGCCugCa -3'
miRNA:   3'- -CgAGCGGGACGUGaagcuGCCGGugG- -5'
11403 3' -58.1 NC_003085.1 + 23422 0.74 0.175112
Target:  5'- cGCUCGCCCUGCucCUUCaacugcuGGCGcagcGUCGCCa -3'
miRNA:   3'- -CGAGCGGGACGu-GAAG-------CUGC----CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 25558 0.74 0.17558
Target:  5'- uGCUCGCgacuuUCUGCGCgUgGACGGCUGCUg -3'
miRNA:   3'- -CGAGCG-----GGACGUGaAgCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 9649 0.73 0.200422
Target:  5'- uGgUgGCCCUGUgaagAUUggGACGGCCGCCa -3'
miRNA:   3'- -CgAgCGGGACG----UGAagCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 18533 0.72 0.233015
Target:  5'- gGCU-GCCUgucGCACcuucucguaugCGACGGCCGCCa -3'
miRNA:   3'- -CGAgCGGGa--CGUGaa---------GCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 1504 0.72 0.234215
Target:  5'- cCUCGgCCggUGCGCcUC-ACGGCCGCCa -3'
miRNA:   3'- cGAGCgGG--ACGUGaAGcUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 41708 0.72 0.259315
Target:  5'- gGCUCGCUCa-CGCUUC-ACGGCCuCCa -3'
miRNA:   3'- -CGAGCGGGacGUGAAGcUGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 5644 0.71 0.265924
Target:  5'- cGCUCGCCCUGUgACUUgCG-CGagcGCCGCg -3'
miRNA:   3'- -CGAGCGGGACG-UGAA-GCuGC---CGGUGg -5'
11403 3' -58.1 NC_003085.1 + 21570 0.71 0.265924
Target:  5'- uGgaCGCCCUGCACcaggUGACGGgCAUg -3'
miRNA:   3'- -CgaGCGGGACGUGaa--GCUGCCgGUGg -5'
11403 3' -58.1 NC_003085.1 + 28589 0.71 0.293725
Target:  5'- cGUaUGCCUUGCGCUggGugGGCggCACCg -3'
miRNA:   3'- -CGaGCGGGACGUGAagCugCCG--GUGG- -5'
11403 3' -58.1 NC_003085.1 + 26105 0.71 0.293725
Target:  5'- uGCUgGggCUGCGCcUCGGCGGCCGgCg -3'
miRNA:   3'- -CGAgCggGACGUGaAGCUGCCGGUgG- -5'
11403 3' -58.1 NC_003085.1 + 5849 0.7 0.316028
Target:  5'- uGCcCGCUCUGCACUcggGAUGGCagCGCCu -3'
miRNA:   3'- -CGaGCGGGACGUGAag-CUGCCG--GUGG- -5'
11403 3' -58.1 NC_003085.1 + 12226 0.7 0.316028
Target:  5'- cGCcUGCCUUgaGCGCggCGGCugGGCCGCCa -3'
miRNA:   3'- -CGaGCGGGA--CGUGaaGCUG--CCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 25277 0.7 0.339585
Target:  5'- gGCgCGCCCgucuaccuCACcgCGACGGCCgGCCa -3'
miRNA:   3'- -CGaGCGGGac------GUGaaGCUGCCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 40826 0.7 0.347715
Target:  5'- gGC-CGgCCUGUACc-UGACGGCgGCCg -3'
miRNA:   3'- -CGaGCgGGACGUGaaGCUGCCGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.