miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 29226 0.66 0.377598
Target:  5'- cCACCUGGGCGaaGGUggCGACGUaCCGGa -3'
miRNA:   3'- -GUGGGCCUGCg-CCG--GCUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 45538 0.66 0.377598
Target:  5'- gGCCCGcGACGCGaGCCuGGCGUgUCAa- -3'
miRNA:   3'- gUGGGC-CUGCGC-CGG-CUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 5859 0.66 0.369297
Target:  5'- gCACUCGGGauggcaGCGccugcgaccucuGCCGugGCgCCGGGu -3'
miRNA:   3'- -GUGGGCCUg-----CGC------------CGGCugCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 24752 0.66 0.369297
Target:  5'- gCACCCGcGAaGCcGCCGAUGCcgccgUCCAGc -3'
miRNA:   3'- -GUGGGC-CUgCGcCGGCUGCG-----AGGUCc -5'
11405 3' -62.7 NC_003085.1 + 17854 0.66 0.369297
Target:  5'- gGCCC---CGCGGCCGGUGCcUCCuGGg -3'
miRNA:   3'- gUGGGccuGCGCCGGCUGCG-AGGuCC- -5'
11405 3' -62.7 NC_003085.1 + 34256 0.66 0.364377
Target:  5'- uCGCCCacuucCGCGGCgCGGCGCUggcgcaccggcucagCCGGGc -3'
miRNA:   3'- -GUGGGccu--GCGCCG-GCUGCGA---------------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 5139 0.66 0.361122
Target:  5'- aCGCCCGaaGAgGaGGCCGACGCga-AGGc -3'
miRNA:   3'- -GUGGGC--CUgCgCCGGCUGCGaggUCC- -5'
11405 3' -62.7 NC_003085.1 + 25462 0.66 0.361122
Target:  5'- -uCUgGGugGuCGGCCGcCGCUcuucuucacCCAGGg -3'
miRNA:   3'- guGGgCCugC-GCCGGCuGCGA---------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 41019 0.66 0.353074
Target:  5'- uCGCCgUGGGCGUcGCUGGCGUccUCCuGGg -3'
miRNA:   3'- -GUGG-GCCUGCGcCGGCUGCG--AGGuCC- -5'
11405 3' -62.7 NC_003085.1 + 30234 0.66 0.353074
Target:  5'- gGCCCuGGCGCaGGCCuugcgcGGCGC-CCAGc -3'
miRNA:   3'- gUGGGcCUGCG-CCGG------CUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 20607 0.66 0.353074
Target:  5'- aCGCCCaaGGugaGCGucaGCCGGCGCUUCGcGGa -3'
miRNA:   3'- -GUGGG--CCug-CGC---CGGCUGCGAGGU-CC- -5'
11405 3' -62.7 NC_003085.1 + 34848 0.66 0.353074
Target:  5'- aGCCCaugagcuucGACGCGGCgGACGCaCCAc- -3'
miRNA:   3'- gUGGGc--------CUGCGCCGgCUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 36899 0.66 0.353074
Target:  5'- gCACCUGGGCcaaCaGC--ACGCUCCAGGa -3'
miRNA:   3'- -GUGGGCCUGc--GcCGgcUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 26558 0.66 0.353074
Target:  5'- gGCUCGGAgaCGCcgaacGCCGACGCaCCGGa -3'
miRNA:   3'- gUGGGCCU--GCGc----CGGCUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 5235 0.66 0.353074
Target:  5'- cUACUugUGGAUGUGGUgguuCGACGCUgCGGGc -3'
miRNA:   3'- -GUGG--GCCUGCGCCG----GCUGCGAgGUCC- -5'
11405 3' -62.7 NC_003085.1 + 27005 0.66 0.353074
Target:  5'- gUACCUGucgguguaGACG-GGCUGGCGCUCCucgacGGa -3'
miRNA:   3'- -GUGGGC--------CUGCgCCGGCUGCGAGGu----CC- -5'
11405 3' -62.7 NC_003085.1 + 25738 0.66 0.353074
Target:  5'- gCGCCaCGGugGgGGCCGGgGCcgUCUugacggAGGa -3'
miRNA:   3'- -GUGG-GCCugCgCCGGCUgCG--AGG------UCC- -5'
11405 3' -62.7 NC_003085.1 + 42746 0.66 0.345154
Target:  5'- gAUgCGGGCGCGGUgGACGgcaUCCAu- -3'
miRNA:   3'- gUGgGCCUGCGCCGgCUGCg--AGGUcc -5'
11405 3' -62.7 NC_003085.1 + 11768 0.66 0.345154
Target:  5'- cUACgaCGGuACgGCGGCgCcGCGCUCCGGGc -3'
miRNA:   3'- -GUGg-GCC-UG-CGCCG-GcUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 42539 0.66 0.345154
Target:  5'- cCGCCCGGgAUGCGGUgGACcaugagcgggaaGCggUCGGGg -3'
miRNA:   3'- -GUGGGCC-UGCGCCGgCUG------------CGa-GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.