miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 49037 0.74 0.108606
Target:  5'- gACUCGuaGACGCGGCCGAgacugGCgUCCAGGg -3'
miRNA:   3'- gUGGGC--CUGCGCCGGCUg----CG-AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 48782 0.74 0.108606
Target:  5'- aGgCCGGACGCgggacagguGGCCGGCGacgUCCGGGc -3'
miRNA:   3'- gUgGGCCUGCG---------CCGGCUGCg--AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 48529 1.09 0.000201
Target:  5'- gCACCCGGACGCGGCCGACGCUCCAGGa -3'
miRNA:   3'- -GUGGGCCUGCGCCGGCUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 45538 0.66 0.377598
Target:  5'- gGCCCGcGACGCGaGCCuGGCGUgUCAa- -3'
miRNA:   3'- gUGGGC-CUGCGC-CGG-CUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 45487 0.66 0.337362
Target:  5'- gCGCUCGacaaGCGCGGCCGucugGCUCCAu- -3'
miRNA:   3'- -GUGGGCc---UGCGCCGGCug--CGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 42763 0.67 0.307485
Target:  5'- -gUgCGGugcaGgGCGGCCGcaagcCGCUCCAGGg -3'
miRNA:   3'- guGgGCC----UgCGCCGGCu----GCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 42746 0.66 0.345154
Target:  5'- gAUgCGGGCGCGGUgGACGgcaUCCAu- -3'
miRNA:   3'- gUGgGCCUGCGCCGgCUGCg--AGGUcc -5'
11405 3' -62.7 NC_003085.1 + 42539 0.66 0.345154
Target:  5'- cCGCCCGGgAUGCGGUgGACcaugagcgggaaGCggUCGGGg -3'
miRNA:   3'- -GUGGGCC-UGCGCCGgCUG------------CGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 42082 0.7 0.203048
Target:  5'- uCACgCGGGCGCcgucGGCCucguacuggagcGGCGC-CCAGGg -3'
miRNA:   3'- -GUGgGCCUGCG----CCGG------------CUGCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 41019 0.66 0.353074
Target:  5'- uCGCCgUGGGCGUcGCUGGCGUccUCCuGGg -3'
miRNA:   3'- -GUGG-GCCUGCGcCGGCUGCG--AGGuCC- -5'
11405 3' -62.7 NC_003085.1 + 39743 0.67 0.300339
Target:  5'- aCGCCgaGGACacacagGCGuuCCGGCGCUCCAGu -3'
miRNA:   3'- -GUGGg-CCUG------CGCc-GGCUGCGAGGUCc -5'
11405 3' -62.7 NC_003085.1 + 36899 0.66 0.353074
Target:  5'- gCACCUGGGCcaaCaGC--ACGCUCCAGGa -3'
miRNA:   3'- -GUGGGCCUGc--GcCGgcUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 36517 0.69 0.213526
Target:  5'- -uUCCGGACGCGGCgCGgACGgUCCu-- -3'
miRNA:   3'- guGGGCCUGCGCCG-GC-UGCgAGGucc -5'
11405 3' -62.7 NC_003085.1 + 35972 0.69 0.224464
Target:  5'- uCGCguaGGGgGCcaGGCCGACGC-CCAGGa -3'
miRNA:   3'- -GUGgg-CCUgCG--CCGGCUGCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34981 0.68 0.273041
Target:  5'- -uUgCGGAUGCGGUCGACGU--CGGGa -3'
miRNA:   3'- guGgGCCUGCGCCGGCUGCGagGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34848 0.66 0.353074
Target:  5'- aGCCCaugagcuucGACGCGGCgGACGCaCCAc- -3'
miRNA:   3'- gUGGGc--------CUGCGCCGgCUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 34344 0.68 0.279674
Target:  5'- gCACCCGccguuGAUGCGGaCCuccgGAgGCUCaCAGGg -3'
miRNA:   3'- -GUGGGC-----CUGCGCC-GG----CUgCGAG-GUCC- -5'
11405 3' -62.7 NC_003085.1 + 34334 0.7 0.203048
Target:  5'- uGCUCGucgcaccACGCGGCgCGGCGCUCCAu- -3'
miRNA:   3'- gUGGGCc------UGCGCCG-GCUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 34256 0.66 0.364377
Target:  5'- uCGCCCacuucCGCGGCgCGGCGCUggcgcaccggcucagCCGGGc -3'
miRNA:   3'- -GUGGGccu--GCGCCG-GCUGCGA---------------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34186 0.71 0.154707
Target:  5'- gACgCGGGCGCGGCgggugagcucggccgCGGC-CUCCGGGu -3'
miRNA:   3'- gUGgGCCUGCGCCG---------------GCUGcGAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.