miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 33341 0.68 0.279674
Target:  5'- uCAUCCGGGCGU---CGAC-CUCCAGGa -3'
miRNA:   3'- -GUGGGCCUGCGccgGCUGcGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 33039 0.67 0.300339
Target:  5'- gCGCCUGGAuaUGgGGCCagaGACGCUUCAa- -3'
miRNA:   3'- -GUGGGCCU--GCgCCGG---CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 32494 0.67 0.307485
Target:  5'- gGCCCGGAgcgucaucuCGUGGaaGAUGCcuucCCAGGu -3'
miRNA:   3'- gUGGGCCU---------GCGCCggCUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 31496 0.75 0.078569
Target:  5'- gGCCC--GCGCuGCCGGCGCUUCAGGu -3'
miRNA:   3'- gUGGGccUGCGcCGGCUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 31341 0.67 0.306046
Target:  5'- cCGCgCGGACGUaccgguaGGCCGccauGCGCagccgcuUCCAGGc -3'
miRNA:   3'- -GUGgGCCUGCG-------CCGGC----UGCG-------AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 30234 0.66 0.353074
Target:  5'- gGCCCuGGCGCaGGCCuugcgcGGCGC-CCAGc -3'
miRNA:   3'- gUGGGcCUGCG-CCGG------CUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 29740 0.72 0.130811
Target:  5'- uCGCCCaGGACGUGGCCGccgucGCGCcCCAc- -3'
miRNA:   3'- -GUGGG-CCUGCGCCGGC-----UGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 29413 0.69 0.213526
Target:  5'- cCGCUCcaggaGGGCGCGGgCGGCGgcaaugccgucCUCCAGGc -3'
miRNA:   3'- -GUGGG-----CCUGCGCCgGCUGC-----------GAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 29226 0.66 0.377598
Target:  5'- cCACCUGGGCGaaGGUggCGACGUaCCGGa -3'
miRNA:   3'- -GUGGGCCUGCg-CCG--GCUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 29101 0.69 0.23011
Target:  5'- uGCCCGGcgucaGCaGCGGCgacgCGGCGCggaaCCAGGc -3'
miRNA:   3'- gUGGGCC-----UG-CGCCG----GCUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 27005 0.66 0.353074
Target:  5'- gUACCUGucgguguaGACG-GGCUGGCGCUCCucgacGGa -3'
miRNA:   3'- -GUGGGC--------CUGCgCCGGCUGCGAGGu----CC- -5'
11405 3' -62.7 NC_003085.1 + 26558 0.66 0.353074
Target:  5'- gGCUCGGAgaCGCcgaacGCCGACGCaCCGGa -3'
miRNA:   3'- gUGGGCCU--GCGc----CGGCUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 26385 0.69 0.224464
Target:  5'- uGCUCGGGCcGCugagcgcccagGGCUGGCaguuGCUCCAGGu -3'
miRNA:   3'- gUGGGCCUG-CG-----------CCGGCUG----CGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25738 0.66 0.353074
Target:  5'- gCGCCaCGGugGgGGCCGGgGCcgUCUugacggAGGa -3'
miRNA:   3'- -GUGG-GCCugCgCCGGCUgCG--AGG------UCC- -5'
11405 3' -62.7 NC_003085.1 + 25462 0.66 0.361122
Target:  5'- -uCUgGGugGuCGGCCGcCGCUcuucuucacCCAGGg -3'
miRNA:   3'- guGGgCCugC-GCCGGCuGCGA---------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25390 0.68 0.273041
Target:  5'- cCACCCGaGAcgagcCGCGGCUucccGCGCUucgCCAGGc -3'
miRNA:   3'- -GUGGGC-CU-----GCGCCGGc---UGCGA---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25052 0.69 0.235876
Target:  5'- gACCCGGuguucgGCGCGGCCGA-GUUCaucuaccugaAGGg -3'
miRNA:   3'- gUGGGCC------UGCGCCGGCUgCGAGg---------UCC- -5'
11405 3' -62.7 NC_003085.1 + 24858 0.7 0.196479
Target:  5'- uCGCCUGGGC-CGGCaaccucaccugcagCGGCGCccaguUCCAGGg -3'
miRNA:   3'- -GUGGGCCUGcGCCG--------------GCUGCG-----AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 24752 0.66 0.369297
Target:  5'- gCACCCGcGAaGCcGCCGAUGCcgccgUCCAGc -3'
miRNA:   3'- -GUGGGC-CUgCGcCGGCUGCG-----AGGUCc -5'
11405 3' -62.7 NC_003085.1 + 24392 0.66 0.337362
Target:  5'- gGCCUGGACGgGGCCG-UGC-CgGuGGa -3'
miRNA:   3'- gUGGGCCUGCgCCGGCuGCGaGgU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.