Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11405 | 3' | -62.7 | NC_003085.1 | + | 8658 | 0.66 | 0.345154 |
Target: 5'- gGCCgGGACGCgcguGGCCuugGGCGC-CgGGGu -3' miRNA: 3'- gUGGgCCUGCG----CCGG---CUGCGaGgUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 11883 | 0.66 | 0.337362 |
Target: 5'- uCGCCUGaGCGCgccgaguucauGGCCaGGCGCUCCAc- -3' miRNA: 3'- -GUGGGCcUGCG-----------CCGG-CUGCGAGGUcc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 42539 | 0.66 | 0.345154 |
Target: 5'- cCGCCCGGgAUGCGGUgGACcaugagcgggaaGCggUCGGGg -3' miRNA: 3'- -GUGGGCC-UGCGCCGgCUG------------CGa-GGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 27005 | 0.66 | 0.353074 |
Target: 5'- gUACCUGucgguguaGACG-GGCUGGCGCUCCucgacGGa -3' miRNA: 3'- -GUGGGC--------CUGCgCCGGCUGCGAGGu----CC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 25738 | 0.66 | 0.353074 |
Target: 5'- gCGCCaCGGugGgGGCCGGgGCcgUCUugacggAGGa -3' miRNA: 3'- -GUGG-GCCugCgCCGGCUgCG--AGG------UCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 34848 | 0.66 | 0.353074 |
Target: 5'- aGCCCaugagcuucGACGCGGCgGACGCaCCAc- -3' miRNA: 3'- gUGGGc--------CUGCGCCGgCUGCGaGGUcc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 23197 | 0.67 | 0.293322 |
Target: 5'- gGCCaGGACccugugaaggcaGUGGCCGGgcUGCUCCAGa -3' miRNA: 3'- gUGGgCCUG------------CGCCGGCU--GCGAGGUCc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 42763 | 0.67 | 0.307485 |
Target: 5'- -gUgCGGugcaGgGCGGCCGcaagcCGCUCCAGGg -3' miRNA: 3'- guGgGCC----UgCGCCGGCu----GCGAGGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 32494 | 0.67 | 0.307485 |
Target: 5'- gGCCCGGAgcgucaucuCGUGGaaGAUGCcuucCCAGGu -3' miRNA: 3'- gUGGGCCU---------GCGCCggCUGCGa---GGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 31341 | 0.67 | 0.306046 |
Target: 5'- cCGCgCGGACGUaccgguaGGCCGccauGCGCagccgcuUCCAGGc -3' miRNA: 3'- -GUGgGCCUGCG-------CCGGC----UGCG-------AGGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 39743 | 0.67 | 0.300339 |
Target: 5'- aCGCCgaGGACacacagGCGuuCCGGCGCUCCAGu -3' miRNA: 3'- -GUGGg-CCUG------CGCc-GGCUGCGAGGUCc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 22773 | 0.67 | 0.289174 |
Target: 5'- cCGCCgCGGugGCgacggcagcggcaacGGCCGcuccCGC-CCAGGa -3' miRNA: 3'- -GUGG-GCCugCG---------------CCGGCu---GCGaGGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 701 | 0.67 | 0.300339 |
Target: 5'- nGCCuCGGGCGCGGCCuGAgcaGgUCCAc- -3' miRNA: 3'- gUGG-GCCUGCGCCGG-CUg--CgAGGUcc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 22893 | 0.67 | 0.307485 |
Target: 5'- aGCCUGGuGCGacucCGGCgGAgGCUgCCGGGg -3' miRNA: 3'- gUGGGCC-UGC----GCCGgCUgCGA-GGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 1494 | 0.67 | 0.293322 |
Target: 5'- uGCUC-GACGCGGCCcguccGGCGCUCgGGc -3' miRNA: 3'- gUGGGcCUGCGCCGG-----CUGCGAGgUCc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 33039 | 0.67 | 0.300339 |
Target: 5'- gCGCCUGGAuaUGgGGCCagaGACGCUUCAa- -3' miRNA: 3'- -GUGGGCCU--GCgCCGG---CUGCGAGGUcc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 2766 | 0.68 | 0.250207 |
Target: 5'- uCACCCGGGCGCGauguaauuuccucucGCCuGACGUcuucUCUAGcGg -3' miRNA: 3'- -GUGGGCCUGCGC---------------CGG-CUGCG----AGGUC-C- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 6010 | 0.68 | 0.2539 |
Target: 5'- aCGgCUGGGCGCGGauguacgcCCgGACGCcgcgCCAGGa -3' miRNA: 3'- -GUgGGCCUGCGCC--------GG-CUGCGa---GGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 34344 | 0.68 | 0.279674 |
Target: 5'- gCACCCGccguuGAUGCGGaCCuccgGAgGCUCaCAGGg -3' miRNA: 3'- -GUGGGC-----CUGCGCC-GG----CUgCGAG-GUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 33341 | 0.68 | 0.279674 |
Target: 5'- uCAUCCGGGCGU---CGAC-CUCCAGGa -3' miRNA: 3'- -GUGGGCCUGCGccgGCUGcGAGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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