Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11405 | 3' | -62.7 | NC_003085.1 | + | 3210 | 0.69 | 0.224464 |
Target: 5'- gGCCCGaugccgcaaGGCGauGCCGGCGCUaCCuGGg -3' miRNA: 3'- gUGGGC---------CUGCgcCGGCUGCGA-GGuCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 26385 | 0.69 | 0.224464 |
Target: 5'- uGCUCGGGCcGCugagcgcccagGGCUGGCaguuGCUCCAGGu -3' miRNA: 3'- gUGGGCCUG-CG-----------CCGGCUG----CGAGGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 19533 | 0.69 | 0.224464 |
Target: 5'- aGCCCagcGGACGCGcGcCCGACGCggagaaCCuGGa -3' miRNA: 3'- gUGGG---CCUGCGC-C-GGCUGCGa-----GGuCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 29101 | 0.69 | 0.23011 |
Target: 5'- uGCCCGGcgucaGCaGCGGCgacgCGGCGCggaaCCAGGc -3' miRNA: 3'- gUGGGCC-----UG-CGCCG----GCUGCGa---GGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 25052 | 0.69 | 0.235876 |
Target: 5'- gACCCGGuguucgGCGCGGCCGA-GUUCaucuaccugaAGGg -3' miRNA: 3'- gUGGGCC------UGCGCCGGCUgCGAGg---------UCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 9437 | 0.69 | 0.241762 |
Target: 5'- gACgCGGACGU-GCCGGCGCUCauGGa -3' miRNA: 3'- gUGgGCCUGCGcCGGCUGCGAGguCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 36517 | 0.69 | 0.213526 |
Target: 5'- -uUCCGGACGCGGCgCGgACGgUCCu-- -3' miRNA: 3'- guGGGCCUGCGCCG-GC-UGCgAGGucc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 29413 | 0.69 | 0.213526 |
Target: 5'- cCGCUCcaggaGGGCGCGGgCGGCGgcaaugccgucCUCCAGGc -3' miRNA: 3'- -GUGGG-----CCUGCGCCgGCUGC-----------GAGGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 35972 | 0.69 | 0.224464 |
Target: 5'- uCGCguaGGGgGCcaGGCCGACGC-CCAGGa -3' miRNA: 3'- -GUGgg-CCUgCG--CCGGCUGCGaGGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 2766 | 0.68 | 0.250207 |
Target: 5'- uCACCCGGGCGCGauguaauuuccucucGCCuGACGUcuucUCUAGcGg -3' miRNA: 3'- -GUGGGCCUGCGC---------------CGG-CUGCG----AGGUC-C- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 6010 | 0.68 | 0.2539 |
Target: 5'- aCGgCUGGGCGCGGauguacgcCCgGACGCcgcgCCAGGa -3' miRNA: 3'- -GUgGGCCUGCGCC--------GG-CUGCGa---GGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 33341 | 0.68 | 0.279674 |
Target: 5'- uCAUCCGGGCGU---CGAC-CUCCAGGa -3' miRNA: 3'- -GUGGGCCUGCGccgGCUGcGAGGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 34981 | 0.68 | 0.273041 |
Target: 5'- -uUgCGGAUGCGGUCGACGU--CGGGa -3' miRNA: 3'- guGgGCCUGCGCCGGCUGCGagGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 34344 | 0.68 | 0.279674 |
Target: 5'- gCACCCGccguuGAUGCGGaCCuccgGAgGCUCaCAGGg -3' miRNA: 3'- -GUGGGC-----CUGCGCC-GG----CUgCGAG-GUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 25390 | 0.68 | 0.273041 |
Target: 5'- cCACCCGaGAcgagcCGCGGCUucccGCGCUucgCCAGGc -3' miRNA: 3'- -GUGGGC-CU-----GCGCCGGc---UGCGA---GGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 33039 | 0.67 | 0.300339 |
Target: 5'- gCGCCUGGAuaUGgGGCCagaGACGCUUCAa- -3' miRNA: 3'- -GUGGGCCU--GCgCCGG---CUGCGAGGUcc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 39743 | 0.67 | 0.300339 |
Target: 5'- aCGCCgaGGACacacagGCGuuCCGGCGCUCCAGu -3' miRNA: 3'- -GUGGg-CCUG------CGCc-GGCUGCGAGGUCc -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 22773 | 0.67 | 0.289174 |
Target: 5'- cCGCCgCGGugGCgacggcagcggcaacGGCCGcuccCGC-CCAGGa -3' miRNA: 3'- -GUGG-GCCugCG---------------CCGGCu---GCGaGGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 22893 | 0.67 | 0.307485 |
Target: 5'- aGCCUGGuGCGacucCGGCgGAgGCUgCCGGGg -3' miRNA: 3'- gUGGGCC-UGC----GCCGgCUgCGA-GGUCC- -5' |
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11405 | 3' | -62.7 | NC_003085.1 | + | 701 | 0.67 | 0.300339 |
Target: 5'- nGCCuCGGGCGCGGCCuGAgcaGgUCCAc- -3' miRNA: 3'- gUGG-GCCUGCGCCGG-CUg--CgAGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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