miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 11883 0.66 0.337362
Target:  5'- uCGCCUGaGCGCgccgaguucauGGCCaGGCGCUCCAc- -3'
miRNA:   3'- -GUGGGCcUGCG-----------CCGG-CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 12167 0.76 0.072403
Target:  5'- -gUCUGGA-GUGGCCGugGUUCCAGGu -3'
miRNA:   3'- guGGGCCUgCGCCGGCugCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 12412 0.8 0.038409
Target:  5'- gACCCGG-CGgGGCCGcuGCGCUCCgAGGa -3'
miRNA:   3'- gUGGGCCuGCgCCGGC--UGCGAGG-UCC- -5'
11405 3' -62.7 NC_003085.1 + 15259 0.72 0.130811
Target:  5'- gACCCGGAggcCGCGGCCGA-GCUCa--- -3'
miRNA:   3'- gUGGGCCU---GCGCCGGCUgCGAGgucc -5'
11405 3' -62.7 NC_003085.1 + 16953 0.71 0.161271
Target:  5'- aCACCUGGGaa-GGCUcuuccacgagauGACGCUCCGGGc -3'
miRNA:   3'- -GUGGGCCUgcgCCGG------------CUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 17854 0.66 0.369297
Target:  5'- gGCCC---CGCGGCCGGUGCcUCCuGGg -3'
miRNA:   3'- gUGGGccuGCGCCGGCUGCG-AGGuCC- -5'
11405 3' -62.7 NC_003085.1 + 19533 0.69 0.224464
Target:  5'- aGCCCagcGGACGCGcGcCCGACGCggagaaCCuGGa -3'
miRNA:   3'- gUGGG---CCUGCGC-C-GGCUGCGa-----GGuCC- -5'
11405 3' -62.7 NC_003085.1 + 20607 0.66 0.353074
Target:  5'- aCGCCCaaGGugaGCGucaGCCGGCGCUUCGcGGa -3'
miRNA:   3'- -GUGGG--CCug-CGC---CGGCUGCGAGGU-CC- -5'
11405 3' -62.7 NC_003085.1 + 22773 0.67 0.289174
Target:  5'- cCGCCgCGGugGCgacggcagcggcaacGGCCGcuccCGC-CCAGGa -3'
miRNA:   3'- -GUGG-GCCugCG---------------CCGGCu---GCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 22893 0.67 0.307485
Target:  5'- aGCCUGGuGCGacucCGGCgGAgGCUgCCGGGg -3'
miRNA:   3'- gUGGGCC-UGC----GCCGgCUgCGA-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 23197 0.67 0.293322
Target:  5'- gGCCaGGACccugugaaggcaGUGGCCGGgcUGCUCCAGa -3'
miRNA:   3'- gUGGgCCUG------------CGCCGGCU--GCGAGGUCc -5'
11405 3' -62.7 NC_003085.1 + 24392 0.66 0.337362
Target:  5'- gGCCUGGACGgGGCCG-UGC-CgGuGGa -3'
miRNA:   3'- gUGGGCCUGCgCCGGCuGCGaGgU-CC- -5'
11405 3' -62.7 NC_003085.1 + 24752 0.66 0.369297
Target:  5'- gCACCCGcGAaGCcGCCGAUGCcgccgUCCAGc -3'
miRNA:   3'- -GUGGGC-CUgCGcCGGCUGCG-----AGGUCc -5'
11405 3' -62.7 NC_003085.1 + 24858 0.7 0.196479
Target:  5'- uCGCCUGGGC-CGGCaaccucaccugcagCGGCGCccaguUCCAGGg -3'
miRNA:   3'- -GUGGGCCUGcGCCG--------------GCUGCG-----AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25052 0.69 0.235876
Target:  5'- gACCCGGuguucgGCGCGGCCGA-GUUCaucuaccugaAGGg -3'
miRNA:   3'- gUGGGCC------UGCGCCGGCUgCGAGg---------UCC- -5'
11405 3' -62.7 NC_003085.1 + 25390 0.68 0.273041
Target:  5'- cCACCCGaGAcgagcCGCGGCUucccGCGCUucgCCAGGc -3'
miRNA:   3'- -GUGGGC-CU-----GCGCCGGc---UGCGA---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25462 0.66 0.361122
Target:  5'- -uCUgGGugGuCGGCCGcCGCUcuucuucacCCAGGg -3'
miRNA:   3'- guGGgCCugC-GCCGGCuGCGA---------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25738 0.66 0.353074
Target:  5'- gCGCCaCGGugGgGGCCGGgGCcgUCUugacggAGGa -3'
miRNA:   3'- -GUGG-GCCugCgCCGGCUgCG--AGG------UCC- -5'
11405 3' -62.7 NC_003085.1 + 26385 0.69 0.224464
Target:  5'- uGCUCGGGCcGCugagcgcccagGGCUGGCaguuGCUCCAGGu -3'
miRNA:   3'- gUGGGCCUG-CG-----------CCGGCUG----CGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 26558 0.66 0.353074
Target:  5'- gGCUCGGAgaCGCcgaacGCCGACGCaCCGGa -3'
miRNA:   3'- gUGGGCCU--GCGc----CGGCUGCGaGGUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.