miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 27005 0.66 0.353074
Target:  5'- gUACCUGucgguguaGACG-GGCUGGCGCUCCucgacGGa -3'
miRNA:   3'- -GUGGGC--------CUGCgCCGGCUGCGAGGu----CC- -5'
11405 3' -62.7 NC_003085.1 + 29101 0.69 0.23011
Target:  5'- uGCCCGGcgucaGCaGCGGCgacgCGGCGCggaaCCAGGc -3'
miRNA:   3'- gUGGGCC-----UG-CGCCG----GCUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 29226 0.66 0.377598
Target:  5'- cCACCUGGGCGaaGGUggCGACGUaCCGGa -3'
miRNA:   3'- -GUGGGCCUGCg-CCG--GCUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 29413 0.69 0.213526
Target:  5'- cCGCUCcaggaGGGCGCGGgCGGCGgcaaugccgucCUCCAGGc -3'
miRNA:   3'- -GUGGG-----CCUGCGCCgGCUGC-----------GAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 29740 0.72 0.130811
Target:  5'- uCGCCCaGGACGUGGCCGccgucGCGCcCCAc- -3'
miRNA:   3'- -GUGGG-CCUGCGCCGGC-----UGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 30234 0.66 0.353074
Target:  5'- gGCCCuGGCGCaGGCCuugcgcGGCGC-CCAGc -3'
miRNA:   3'- gUGGGcCUGCG-CCGG------CUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 31341 0.67 0.306046
Target:  5'- cCGCgCGGACGUaccgguaGGCCGccauGCGCagccgcuUCCAGGc -3'
miRNA:   3'- -GUGgGCCUGCG-------CCGGC----UGCG-------AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 31496 0.75 0.078569
Target:  5'- gGCCC--GCGCuGCCGGCGCUUCAGGu -3'
miRNA:   3'- gUGGGccUGCGcCGGCUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 32494 0.67 0.307485
Target:  5'- gGCCCGGAgcgucaucuCGUGGaaGAUGCcuucCCAGGu -3'
miRNA:   3'- gUGGGCCU---------GCGCCggCUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 33039 0.67 0.300339
Target:  5'- gCGCCUGGAuaUGgGGCCagaGACGCUUCAa- -3'
miRNA:   3'- -GUGGGCCU--GCgCCGG---CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 33341 0.68 0.279674
Target:  5'- uCAUCCGGGCGU---CGAC-CUCCAGGa -3'
miRNA:   3'- -GUGGGCCUGCGccgGCUGcGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34186 0.71 0.154707
Target:  5'- gACgCGGGCGCGGCgggugagcucggccgCGGC-CUCCGGGu -3'
miRNA:   3'- gUGgGCCUGCGCCG---------------GCUGcGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34256 0.66 0.364377
Target:  5'- uCGCCCacuucCGCGGCgCGGCGCUggcgcaccggcucagCCGGGc -3'
miRNA:   3'- -GUGGGccu--GCGCCG-GCUGCGA---------------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34334 0.7 0.203048
Target:  5'- uGCUCGucgcaccACGCGGCgCGGCGCUCCAu- -3'
miRNA:   3'- gUGGGCc------UGCGCCG-GCUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 34344 0.68 0.279674
Target:  5'- gCACCCGccguuGAUGCGGaCCuccgGAgGCUCaCAGGg -3'
miRNA:   3'- -GUGGGC-----CUGCGCC-GG----CUgCGAG-GUCC- -5'
11405 3' -62.7 NC_003085.1 + 34848 0.66 0.353074
Target:  5'- aGCCCaugagcuucGACGCGGCgGACGCaCCAc- -3'
miRNA:   3'- gUGGGc--------CUGCGCCGgCUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 34981 0.68 0.273041
Target:  5'- -uUgCGGAUGCGGUCGACGU--CGGGa -3'
miRNA:   3'- guGgGCCUGCGCCGGCUGCGagGUCC- -5'
11405 3' -62.7 NC_003085.1 + 35972 0.69 0.224464
Target:  5'- uCGCguaGGGgGCcaGGCCGACGC-CCAGGa -3'
miRNA:   3'- -GUGgg-CCUgCG--CCGGCUGCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 36517 0.69 0.213526
Target:  5'- -uUCCGGACGCGGCgCGgACGgUCCu-- -3'
miRNA:   3'- guGGGCCUGCGCCG-GC-UGCgAGGucc -5'
11405 3' -62.7 NC_003085.1 + 36899 0.66 0.353074
Target:  5'- gCACCUGGGCcaaCaGC--ACGCUCCAGGa -3'
miRNA:   3'- -GUGGGCCUGc--GcCGgcUGCGAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.