miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 33039 0.67 0.300339
Target:  5'- gCGCCUGGAuaUGgGGCCagaGACGCUUCAa- -3'
miRNA:   3'- -GUGGGCCU--GCgCCGG---CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 1494 0.67 0.293322
Target:  5'- uGCUC-GACGCGGCCcguccGGCGCUCgGGc -3'
miRNA:   3'- gUGGGcCUGCGCCGG-----CUGCGAGgUCc -5'
11405 3' -62.7 NC_003085.1 + 25390 0.68 0.273041
Target:  5'- cCACCCGaGAcgagcCGCGGCUucccGCGCUucgCCAGGc -3'
miRNA:   3'- -GUGGGC-CU-----GCGCCGGc---UGCGA---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34981 0.68 0.273041
Target:  5'- -uUgCGGAUGCGGUCGACGU--CGGGa -3'
miRNA:   3'- guGgGCCUGCGCCGGCUGCGagGUCC- -5'
11405 3' -62.7 NC_003085.1 + 36517 0.69 0.213526
Target:  5'- -uUCCGGACGCGGCgCGgACGgUCCu-- -3'
miRNA:   3'- guGGGCCUGCGCCG-GC-UGCgAGGucc -5'
11405 3' -62.7 NC_003085.1 + 29413 0.69 0.213526
Target:  5'- cCGCUCcaggaGGGCGCGGgCGGCGgcaaugccgucCUCCAGGc -3'
miRNA:   3'- -GUGGG-----CCUGCGCCgGCUGC-----------GAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 42082 0.7 0.203048
Target:  5'- uCACgCGGGCGCcgucGGCCucguacuggagcGGCGC-CCAGGg -3'
miRNA:   3'- -GUGgGCCUGCG----CCGG------------CUGCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 7428 0.7 0.203048
Target:  5'- cUACCCGGcuggagagaagGCGCccucguccGuGCCGACGCcgCCGGGg -3'
miRNA:   3'- -GUGGGCC-----------UGCG--------C-CGGCUGCGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 42763 0.67 0.307485
Target:  5'- -gUgCGGugcaGgGCGGCCGcaagcCGCUCCAGGg -3'
miRNA:   3'- guGgGCC----UgCGCCGGCu----GCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 45487 0.66 0.337362
Target:  5'- gCGCUCGacaaGCGCGGCCGucugGCUCCAu- -3'
miRNA:   3'- -GUGGGCc---UGCGCCGGCug--CGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 17854 0.66 0.369297
Target:  5'- gGCCC---CGCGGCCGGUGCcUCCuGGg -3'
miRNA:   3'- gUGGGccuGCGCCGGCUGCG-AGGuCC- -5'
11405 3' -62.7 NC_003085.1 + 24752 0.66 0.369297
Target:  5'- gCACCCGcGAaGCcGCCGAUGCcgccgUCCAGc -3'
miRNA:   3'- -GUGGGC-CUgCGcCGGCUGCG-----AGGUCc -5'
11405 3' -62.7 NC_003085.1 + 5859 0.66 0.369297
Target:  5'- gCACUCGGGauggcaGCGccugcgaccucuGCCGugGCgCCGGGu -3'
miRNA:   3'- -GUGGGCCUg-----CGC------------CGGCugCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34256 0.66 0.364377
Target:  5'- uCGCCCacuucCGCGGCgCGGCGCUggcgcaccggcucagCCGGGc -3'
miRNA:   3'- -GUGGGccu--GCGCCG-GCUGCGA---------------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34848 0.66 0.353074
Target:  5'- aGCCCaugagcuucGACGCGGCgGACGCaCCAc- -3'
miRNA:   3'- gUGGGc--------CUGCGCCGgCUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 25738 0.66 0.353074
Target:  5'- gCGCCaCGGugGgGGCCGGgGCcgUCUugacggAGGa -3'
miRNA:   3'- -GUGG-GCCugCgCCGGCUgCG--AGG------UCC- -5'
11405 3' -62.7 NC_003085.1 + 27005 0.66 0.353074
Target:  5'- gUACCUGucgguguaGACG-GGCUGGCGCUCCucgacGGa -3'
miRNA:   3'- -GUGGGC--------CUGCgCCGGCUGCGAGGu----CC- -5'
11405 3' -62.7 NC_003085.1 + 42539 0.66 0.345154
Target:  5'- cCGCCCGGgAUGCGGUgGACcaugagcgggaaGCggUCGGGg -3'
miRNA:   3'- -GUGGGCC-UGCGCCGgCUG------------CGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 8658 0.66 0.345154
Target:  5'- gGCCgGGACGCgcguGGCCuugGGCGC-CgGGGu -3'
miRNA:   3'- gUGGgCCUGCG----CCGG---CUGCGaGgUCC- -5'
11405 3' -62.7 NC_003085.1 + 11596 0.66 0.344369
Target:  5'- gCACCuCcGACGUcuGGCCGgccagcgcaggcaGCGCUaCCAGGg -3'
miRNA:   3'- -GUGG-GcCUGCG--CCGGC-------------UGCGA-GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.