miRNA display CGI


Results 41 - 60 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 33039 0.67 0.300339
Target:  5'- gCGCCUGGAuaUGgGGCCagaGACGCUUCAa- -3'
miRNA:   3'- -GUGGGCCU--GCgCCGG---CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 31341 0.67 0.306046
Target:  5'- cCGCgCGGACGUaccgguaGGCCGccauGCGCagccgcuUCCAGGc -3'
miRNA:   3'- -GUGgGCCUGCG-------CCGGC----UGCG-------AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 42763 0.67 0.307485
Target:  5'- -gUgCGGugcaGgGCGGCCGcaagcCGCUCCAGGg -3'
miRNA:   3'- guGgGCC----UgCGCCGGCu----GCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 32494 0.67 0.307485
Target:  5'- gGCCCGGAgcgucaucuCGUGGaaGAUGCcuucCCAGGu -3'
miRNA:   3'- gUGGGCCU---------GCGCCggCUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 22893 0.67 0.307485
Target:  5'- aGCCUGGuGCGacucCGGCgGAgGCUgCCGGGg -3'
miRNA:   3'- gUGGGCC-UGC----GCCGgCUgCGA-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 11883 0.66 0.337362
Target:  5'- uCGCCUGaGCGCgccgaguucauGGCCaGGCGCUCCAc- -3'
miRNA:   3'- -GUGGGCcUGCG-----------CCGG-CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 931 0.66 0.337362
Target:  5'- -uCCUGGAgCGuCGGCCG-CG-UCCGGGu -3'
miRNA:   3'- guGGGCCU-GC-GCCGGCuGCgAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 45487 0.66 0.337362
Target:  5'- gCGCUCGacaaGCGCGGCCGucugGCUCCAu- -3'
miRNA:   3'- -GUGGGCc---UGCGCCGGCug--CGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 24392 0.66 0.337362
Target:  5'- gGCCUGGACGgGGCCG-UGC-CgGuGGa -3'
miRNA:   3'- gUGGGCCUGCgCCGGCuGCGaGgU-CC- -5'
11405 3' -62.7 NC_003085.1 + 11596 0.66 0.344369
Target:  5'- gCACCuCcGACGUcuGGCCGgccagcgcaggcaGCGCUaCCAGGg -3'
miRNA:   3'- -GUGG-GcCUGCG--CCGGC-------------UGCGA-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 42746 0.66 0.345154
Target:  5'- gAUgCGGGCGCGGUgGACGgcaUCCAu- -3'
miRNA:   3'- gUGgGCCUGCGCCGgCUGCg--AGGUcc -5'
11405 3' -62.7 NC_003085.1 + 11768 0.66 0.345154
Target:  5'- cUACgaCGGuACgGCGGCgCcGCGCUCCGGGc -3'
miRNA:   3'- -GUGg-GCC-UG-CGCCG-GcUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 8658 0.66 0.345154
Target:  5'- gGCCgGGACGCgcguGGCCuugGGCGC-CgGGGu -3'
miRNA:   3'- gUGGgCCUGCG----CCGG---CUGCGaGgUCC- -5'
11405 3' -62.7 NC_003085.1 + 42539 0.66 0.345154
Target:  5'- cCGCCCGGgAUGCGGUgGACcaugagcgggaaGCggUCGGGg -3'
miRNA:   3'- -GUGGGCC-UGCGCCGgCUG------------CGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 5235 0.66 0.353074
Target:  5'- cUACUugUGGAUGUGGUgguuCGACGCUgCGGGc -3'
miRNA:   3'- -GUGG--GCCUGCGCCG----GCUGCGAgGUCC- -5'
11405 3' -62.7 NC_003085.1 + 26558 0.66 0.353074
Target:  5'- gGCUCGGAgaCGCcgaacGCCGACGCaCCGGa -3'
miRNA:   3'- gUGGGCCU--GCGc----CGGCUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 27005 0.66 0.353074
Target:  5'- gUACCUGucgguguaGACG-GGCUGGCGCUCCucgacGGa -3'
miRNA:   3'- -GUGGGC--------CUGCgCCGGCUGCGAGGu----CC- -5'
11405 3' -62.7 NC_003085.1 + 25738 0.66 0.353074
Target:  5'- gCGCCaCGGugGgGGCCGGgGCcgUCUugacggAGGa -3'
miRNA:   3'- -GUGG-GCCugCgCCGGCUgCG--AGG------UCC- -5'
11405 3' -62.7 NC_003085.1 + 34848 0.66 0.353074
Target:  5'- aGCCCaugagcuucGACGCGGCgGACGCaCCAc- -3'
miRNA:   3'- gUGGGc--------CUGCGCCGgCUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 41019 0.66 0.353074
Target:  5'- uCGCCgUGGGCGUcGCUGGCGUccUCCuGGg -3'
miRNA:   3'- -GUGG-GCCUGCGcCGGCUGCG--AGGuCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.