miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 6010 0.68 0.2539
Target:  5'- aCGgCUGGGCGCGGauguacgcCCgGACGCcgcgCCAGGa -3'
miRNA:   3'- -GUgGGCCUGCGCC--------GG-CUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 2766 0.68 0.250207
Target:  5'- uCACCCGGGCGCGauguaauuuccucucGCCuGACGUcuucUCUAGcGg -3'
miRNA:   3'- -GUGGGCCUGCGC---------------CGG-CUGCG----AGGUC-C- -5'
11405 3' -62.7 NC_003085.1 + 9437 0.69 0.241762
Target:  5'- gACgCGGACGU-GCCGGCGCUCauGGa -3'
miRNA:   3'- gUGgGCCUGCGcCGGCUGCGAGguCC- -5'
11405 3' -62.7 NC_003085.1 + 25052 0.69 0.235876
Target:  5'- gACCCGGuguucgGCGCGGCCGA-GUUCaucuaccugaAGGg -3'
miRNA:   3'- gUGGGCC------UGCGCCGGCUgCGAGg---------UCC- -5'
11405 3' -62.7 NC_003085.1 + 29101 0.69 0.23011
Target:  5'- uGCCCGGcgucaGCaGCGGCgacgCGGCGCggaaCCAGGc -3'
miRNA:   3'- gUGGGCC-----UG-CGCCG----GCUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 35972 0.69 0.224464
Target:  5'- uCGCguaGGGgGCcaGGCCGACGC-CCAGGa -3'
miRNA:   3'- -GUGgg-CCUgCG--CCGGCUGCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 3210 0.69 0.224464
Target:  5'- gGCCCGaugccgcaaGGCGauGCCGGCGCUaCCuGGg -3'
miRNA:   3'- gUGGGC---------CUGCgcCGGCUGCGA-GGuCC- -5'
11405 3' -62.7 NC_003085.1 + 26385 0.69 0.224464
Target:  5'- uGCUCGGGCcGCugagcgcccagGGCUGGCaguuGCUCCAGGu -3'
miRNA:   3'- gUGGGCCUG-CG-----------CCGGCUG----CGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 19533 0.69 0.224464
Target:  5'- aGCCCagcGGACGCGcGcCCGACGCggagaaCCuGGa -3'
miRNA:   3'- gUGGG---CCUGCGC-C-GGCUGCGa-----GGuCC- -5'
11405 3' -62.7 NC_003085.1 + 29413 0.69 0.213526
Target:  5'- cCGCUCcaggaGGGCGCGGgCGGCGgcaaugccgucCUCCAGGc -3'
miRNA:   3'- -GUGGG-----CCUGCGCCgGCUGC-----------GAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 36517 0.69 0.213526
Target:  5'- -uUCCGGACGCGGCgCGgACGgUCCu-- -3'
miRNA:   3'- guGGGCCUGCGCCG-GC-UGCgAGGucc -5'
11405 3' -62.7 NC_003085.1 + 42082 0.7 0.203048
Target:  5'- uCACgCGGGCGCcgucGGCCucguacuggagcGGCGC-CCAGGg -3'
miRNA:   3'- -GUGgGCCUGCG----CCGG------------CUGCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34334 0.7 0.203048
Target:  5'- uGCUCGucgcaccACGCGGCgCGGCGCUCCAu- -3'
miRNA:   3'- gUGGGCc------UGCGCCG-GCUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 7428 0.7 0.203048
Target:  5'- cUACCCGGcuggagagaagGCGCccucguccGuGCCGACGCcgCCGGGg -3'
miRNA:   3'- -GUGGGCC-----------UGCG--------C-CGGCUGCGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 24858 0.7 0.196479
Target:  5'- uCGCCUGGGC-CGGCaaccucaccugcagCGGCGCccaguUCCAGGg -3'
miRNA:   3'- -GUGGGCCUGcGCCG--------------GCUGCG-----AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 6917 0.7 0.183427
Target:  5'- uCGCCCGcGCGCuGGCCGAgGCgaagCGGGa -3'
miRNA:   3'- -GUGGGCcUGCG-CCGGCUgCGag--GUCC- -5'
11405 3' -62.7 NC_003085.1 + 9536 0.7 0.17879
Target:  5'- -cCCUGGuagugcacgACGCGGCCGACGCU--GGGc -3'
miRNA:   3'- guGGGCC---------UGCGCCGGCUGCGAggUCC- -5'
11405 3' -62.7 NC_003085.1 + 666 0.71 0.169829
Target:  5'- cCGCCCGGACGUcGCCGGCcaccugucccGCgUCCGGc -3'
miRNA:   3'- -GUGGGCCUGCGcCGGCUG----------CG-AGGUCc -5'
11405 3' -62.7 NC_003085.1 + 16953 0.71 0.161271
Target:  5'- aCACCUGGGaa-GGCUcuuccacgagauGACGCUCCGGGc -3'
miRNA:   3'- -GUGGGCCUgcgCCGG------------CUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34186 0.71 0.154707
Target:  5'- gACgCGGGCGCGGCgggugagcucggccgCGGC-CUCCGGGu -3'
miRNA:   3'- gUGgGCCUGCGCCG---------------GCUGcGAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.