miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 29226 0.66 0.377598
Target:  5'- cCACCUGGGCGaaGGUggCGACGUaCCGGa -3'
miRNA:   3'- -GUGGGCCUGCg-CCG--GCUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 1494 0.67 0.293322
Target:  5'- uGCUC-GACGCGGCCcguccGGCGCUCgGGc -3'
miRNA:   3'- gUGGGcCUGCGCCGG-----CUGCGAGgUCc -5'
11405 3' -62.7 NC_003085.1 + 34981 0.68 0.273041
Target:  5'- -uUgCGGAUGCGGUCGACGU--CGGGa -3'
miRNA:   3'- guGgGCCUGCGCCGGCUGCGagGUCC- -5'
11405 3' -62.7 NC_003085.1 + 48529 1.09 0.000201
Target:  5'- gCACCCGGACGCGGCCGACGCUCCAGGa -3'
miRNA:   3'- -GUGGGCCUGCGCCGGCUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34256 0.66 0.364377
Target:  5'- uCGCCCacuucCGCGGCgCGGCGCUggcgcaccggcucagCCGGGc -3'
miRNA:   3'- -GUGGGccu--GCGCCG-GCUGCGA---------------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34848 0.66 0.353074
Target:  5'- aGCCCaugagcuucGACGCGGCgGACGCaCCAc- -3'
miRNA:   3'- gUGGGc--------CUGCGCCGgCUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 27005 0.66 0.353074
Target:  5'- gUACCUGucgguguaGACG-GGCUGGCGCUCCucgacGGa -3'
miRNA:   3'- -GUGGGC--------CUGCgCCGGCUGCGAGGu----CC- -5'
11405 3' -62.7 NC_003085.1 + 42539 0.66 0.345154
Target:  5'- cCGCCCGGgAUGCGGUgGACcaugagcgggaaGCggUCGGGg -3'
miRNA:   3'- -GUGGGCC-UGCGCCGgCUG------------CGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 45487 0.66 0.337362
Target:  5'- gCGCUCGacaaGCGCGGCCGucugGCUCCAu- -3'
miRNA:   3'- -GUGGGCc---UGCGCCGGCug--CGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 33039 0.67 0.300339
Target:  5'- gCGCCUGGAuaUGgGGCCagaGACGCUUCAa- -3'
miRNA:   3'- -GUGGGCCU--GCgCCGG---CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 32494 0.67 0.307485
Target:  5'- gGCCCGGAgcgucaucuCGUGGaaGAUGCcuucCCAGGu -3'
miRNA:   3'- gUGGGCCU---------GCGCCggCUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 11596 0.66 0.344369
Target:  5'- gCACCuCcGACGUcuGGCCGgccagcgcaggcaGCGCUaCCAGGg -3'
miRNA:   3'- -GUGG-GcCUGCG--CCGGC-------------UGCGA-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 17854 0.66 0.369297
Target:  5'- gGCCC---CGCGGCCGGUGCcUCCuGGg -3'
miRNA:   3'- gUGGGccuGCGCCGGCUGCG-AGGuCC- -5'
11405 3' -62.7 NC_003085.1 + 31341 0.67 0.306046
Target:  5'- cCGCgCGGACGUaccgguaGGCCGccauGCGCagccgcuUCCAGGc -3'
miRNA:   3'- -GUGgGCCUGCG-------CCGGC----UGCG-------AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 24752 0.66 0.369297
Target:  5'- gCACCCGcGAaGCcGCCGAUGCcgccgUCCAGc -3'
miRNA:   3'- -GUGGGC-CUgCGcCGGCUGCG-----AGGUCc -5'
11405 3' -62.7 NC_003085.1 + 8658 0.66 0.345154
Target:  5'- gGCCgGGACGCgcguGGCCuugGGCGC-CgGGGu -3'
miRNA:   3'- gUGGgCCUGCG----CCGG---CUGCGaGgUCC- -5'
11405 3' -62.7 NC_003085.1 + 39743 0.67 0.300339
Target:  5'- aCGCCgaGGACacacagGCGuuCCGGCGCUCCAGu -3'
miRNA:   3'- -GUGGg-CCUG------CGCc-GGCUGCGAGGUCc -5'
11405 3' -62.7 NC_003085.1 + 25390 0.68 0.273041
Target:  5'- cCACCCGaGAcgagcCGCGGCUucccGCGCUucgCCAGGc -3'
miRNA:   3'- -GUGGGC-CU-----GCGCCGGc---UGCGA---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 5859 0.66 0.369297
Target:  5'- gCACUCGGGauggcaGCGccugcgaccucuGCCGugGCgCCGGGu -3'
miRNA:   3'- -GUGGGCCUg-----CGC------------CGGCugCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25738 0.66 0.353074
Target:  5'- gCGCCaCGGugGgGGCCGGgGCcgUCUugacggAGGa -3'
miRNA:   3'- -GUGG-GCCugCgCCGGCUgCG--AGG------UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.