miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 31341 0.67 0.306046
Target:  5'- cCGCgCGGACGUaccgguaGGCCGccauGCGCagccgcuUCCAGGc -3'
miRNA:   3'- -GUGgGCCUGCG-------CCGGC----UGCG-------AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 27005 0.66 0.353074
Target:  5'- gUACCUGucgguguaGACG-GGCUGGCGCUCCucgacGGa -3'
miRNA:   3'- -GUGGGC--------CUGCgCCGGCUGCGAGGu----CC- -5'
11405 3' -62.7 NC_003085.1 + 34186 0.71 0.154707
Target:  5'- gACgCGGGCGCGGCgggugagcucggccgCGGC-CUCCGGGu -3'
miRNA:   3'- gUGgGCCUGCGCCG---------------GCUGcGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34981 0.68 0.273041
Target:  5'- -uUgCGGAUGCGGUCGACGU--CGGGa -3'
miRNA:   3'- guGgGCCUGCGCCGGCUGCGagGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25738 0.66 0.353074
Target:  5'- gCGCCaCGGugGgGGCCGGgGCcgUCUugacggAGGa -3'
miRNA:   3'- -GUGG-GCCugCgCCGGCUgCG--AGG------UCC- -5'
11405 3' -62.7 NC_003085.1 + 9536 0.7 0.17879
Target:  5'- -cCCUGGuagugcacgACGCGGCCGACGCU--GGGc -3'
miRNA:   3'- guGGGCC---------UGCGCCGGCUGCGAggUCC- -5'
11405 3' -62.7 NC_003085.1 + 34848 0.66 0.353074
Target:  5'- aGCCCaugagcuucGACGCGGCgGACGCaCCAc- -3'
miRNA:   3'- gUGGGc--------CUGCGCCGgCUGCGaGGUcc -5'
11405 3' -62.7 NC_003085.1 + 34256 0.66 0.364377
Target:  5'- uCGCCCacuucCGCGGCgCGGCGCUggcgcaccggcucagCCGGGc -3'
miRNA:   3'- -GUGGGccu--GCGCCG-GCUGCGA---------------GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 36517 0.69 0.213526
Target:  5'- -uUCCGGACGCGGCgCGgACGgUCCu-- -3'
miRNA:   3'- guGGGCCUGCGCCG-GC-UGCgAGGucc -5'
11405 3' -62.7 NC_003085.1 + 2771 0.74 0.094964
Target:  5'- uGgCCGGAagcaggcaGCGG-CGGCGCUCCAGGc -3'
miRNA:   3'- gUgGGCCUg-------CGCCgGCUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 45487 0.66 0.337362
Target:  5'- gCGCUCGacaaGCGCGGCCGucugGCUCCAu- -3'
miRNA:   3'- -GUGGGCc---UGCGCCGGCug--CGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 42539 0.66 0.345154
Target:  5'- cCGCCCGGgAUGCGGUgGACcaugagcgggaaGCggUCGGGg -3'
miRNA:   3'- -GUGGGCC-UGCGCCGgCUG------------CGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 7428 0.7 0.203048
Target:  5'- cUACCCGGcuggagagaagGCGCccucguccGuGCCGACGCcgCCGGGg -3'
miRNA:   3'- -GUGGGCC-----------UGCG--------C-CGGCUGCGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 48782 0.74 0.108606
Target:  5'- aGgCCGGACGCgggacagguGGCCGGCGacgUCCGGGc -3'
miRNA:   3'- gUgGGCCUGCG---------CCGGCUGCg--AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 9437 0.69 0.241762
Target:  5'- gACgCGGACGU-GCCGGCGCUCauGGa -3'
miRNA:   3'- gUGgGCCUGCGcCGGCUGCGAGguCC- -5'
11405 3' -62.7 NC_003085.1 + 25052 0.69 0.235876
Target:  5'- gACCCGGuguucgGCGCGGCCGA-GUUCaucuaccugaAGGg -3'
miRNA:   3'- gUGGGCC------UGCGCCGGCUgCGAGg---------UCC- -5'
11405 3' -62.7 NC_003085.1 + 26558 0.66 0.353074
Target:  5'- gGCUCGGAgaCGCcgaacGCCGACGCaCCGGa -3'
miRNA:   3'- gUGGGCCU--GCGc----CGGCUGCGaGGUCc -5'
11405 3' -62.7 NC_003085.1 + 666 0.71 0.169829
Target:  5'- cCGCCCGGACGUcGCCGGCcaccugucccGCgUCCGGc -3'
miRNA:   3'- -GUGGGCCUGCGcCGGCUG----------CG-AGGUCc -5'
11405 3' -62.7 NC_003085.1 + 42746 0.66 0.345154
Target:  5'- gAUgCGGGCGCGGUgGACGgcaUCCAu- -3'
miRNA:   3'- gUGgGCCUGCGCCGgCUGCg--AGGUcc -5'
11405 3' -62.7 NC_003085.1 + 5235 0.66 0.353074
Target:  5'- cUACUugUGGAUGUGGUgguuCGACGCUgCGGGc -3'
miRNA:   3'- -GUGG--GCCUGCGCCG----GCUGCGAgGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.