Results 61 - 80 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 44318 | 0.69 | 0.246738 |
Target: 5'- gGUGuuGCGACauggaUGCcuGGGCGGCGaCGCGg -3' miRNA: 3'- gCGCggCGUUG-----ACG--UCCGCUGC-GCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 5525 | 0.7 | 0.206208 |
Target: 5'- aCGUGCuCGC-ACUGguGcGCGaaguGCGCGCAa -3' miRNA: 3'- -GCGCG-GCGuUGACguC-CGC----UGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 5313 | 0.7 | 0.222825 |
Target: 5'- gCGCGCCGUc-CUGaAGGCGACcgagaaGCGCGu -3' miRNA: 3'- -GCGCGGCGuuGACgUCCGCUG------CGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 10821 | 0.7 | 0.222825 |
Target: 5'- aCGCGCaccgggcaGCGACUGCGGGaguggGAUGCGa- -3' miRNA: 3'- -GCGCGg-------CGUUGACGUCCg----CUGCGCgu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 25238 | 0.69 | 0.228612 |
Target: 5'- gGCGCCGCccugguGCgcuccgcgGCGGGCGucgucgucgGCGCGCc -3' miRNA: 3'- gCGCGGCGu-----UGa-------CGUCCGC---------UGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 38844 | 0.69 | 0.228612 |
Target: 5'- cCGCGUCGUcccACUGCGa-CGGCGCGCGg -3' miRNA: 3'- -GCGCGGCGu--UGACGUccGCUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 19063 | 0.69 | 0.240567 |
Target: 5'- gCGCGCgGCGGa-GCAGGCGcCGgGCc -3' miRNA: 3'- -GCGCGgCGUUgaCGUCCGCuGCgCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 9027 | 0.66 | 0.363776 |
Target: 5'- aGgGCUGgaCGGCgGCAGGCaGCGCGCc -3' miRNA: 3'- gCgCGGC--GUUGaCGUCCGcUGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 9143 | 0.66 | 0.363776 |
Target: 5'- aCGCGCCaGCccUUGCcggcgagguagaGGGCGACGCuGCc -3' miRNA: 3'- -GCGCGG-CGuuGACG------------UCCGCUGCG-CGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 26032 | 0.66 | 0.363776 |
Target: 5'- -cUGCUGCGcCUGCuGGGCGAaGCGCu -3' miRNA: 3'- gcGCGGCGUuGACG-UCCGCUgCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 530 | 0.66 | 0.371396 |
Target: 5'- gCGCGCUGCccucgcggagauuGGCgaacgGCgcgAGGCGGCGCGg- -3' miRNA: 3'- -GCGCGGCG-------------UUGa----CG---UCCGCUGCGCgu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 8817 | 0.66 | 0.372249 |
Target: 5'- gCGCGgCGCAGCcaGCgucaGGGCGACGaggacgGCAg -3' miRNA: 3'- -GCGCgGCGUUGa-CG----UCCGCUGCg-----CGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 39114 | 0.66 | 0.372249 |
Target: 5'- aGCGuCCGCGG-UGCcucccgggAGGCGACGUgGCGg -3' miRNA: 3'- gCGC-GGCGUUgACG--------UCCGCUGCG-CGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 2119 | 0.66 | 0.380855 |
Target: 5'- uGuCGCaCGCAuggauggGCaaGGGCGGCGCGCu -3' miRNA: 3'- gC-GCG-GCGUuga----CG--UCCGCUGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 6288 | 0.66 | 0.389594 |
Target: 5'- cCGCGCggcgguggaGCGACUggaGCAGGCcGAgcgggaacCGCGCAg -3' miRNA: 3'- -GCGCGg--------CGUUGA---CGUCCG-CU--------GCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 19209 | 0.66 | 0.389594 |
Target: 5'- gGgGCgGCGGggGCuGGGCGcCGCGCAa -3' miRNA: 3'- gCgCGgCGUUgaCG-UCCGCuGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 24662 | 0.66 | 0.389594 |
Target: 5'- gCGCGCCGCGACggGCuGaGCGGCa---- -3' miRNA: 3'- -GCGCGGCGUUGa-CGuC-CGCUGcgcgu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 5948 | 0.66 | 0.395788 |
Target: 5'- gGCGCCGUucccguccacgccgGGCUGCuggAGGCGGUGgGCc -3' miRNA: 3'- gCGCGGCG--------------UUGACG---UCCGCUGCgCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 45408 | 0.66 | 0.398462 |
Target: 5'- aGCGCCGuCAGCgaaaGCAuGG-GGCGCGg- -3' miRNA: 3'- gCGCGGC-GUUGa---CGU-CCgCUGCGCgu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 47896 | 1 | 0.001132 |
Target: 5'- cCGCGCCGC-ACUGCAGGCGACGCGCAc -3' miRNA: 3'- -GCGCGGCGuUGACGUCCGCUGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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