miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 29401 0.7 0.197314
Target:  5'- -uGCuGCGCCAG-CgCGGCCAGCCcauGGCg -3'
miRNA:   3'- ccCG-CGUGGUCaGgGCCGGUCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 29479 0.7 0.192256
Target:  5'- cGGGCGCguaCAGUCCUacugacuaccuuGGCgCGGCCAu- -3'
miRNA:   3'- -CCCGCGug-GUCAGGG------------CCG-GUCGGUug -5'
11409 5' -62 NC_003085.1 + 30011 0.66 0.340304
Target:  5'- uGGGCG-GCCuuggcgacgucGUCCgCGGCUuccagGGCCAGCa -3'
miRNA:   3'- -CCCGCgUGGu----------CAGG-GCCGG-----UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 30255 0.66 0.348329
Target:  5'- cGGCGC-CCAGcCCCcGCCgccccaGGCgGACg -3'
miRNA:   3'- cCCGCGuGGUCaGGGcCGG------UCGgUUG- -5'
11409 5' -62 NC_003085.1 + 30382 0.69 0.20778
Target:  5'- cGGCGCACUccGUCCgGGCCcggcGCCuGCu -3'
miRNA:   3'- cCCGCGUGGu-CAGGgCCGGu---CGGuUG- -5'
11409 5' -62 NC_003085.1 + 31309 0.69 0.20993
Target:  5'- aGGCGCGCCcgacaccgaagccucAgcagacGUCCCaGGCCGGCCGu- -3'
miRNA:   3'- cCCGCGUGG---------------U------CAGGG-CCGGUCGGUug -5'
11409 5' -62 NC_003085.1 + 31754 0.77 0.05626
Target:  5'- cGGGCGCACCuucGUCCCGGaaagUAGCguGCg -3'
miRNA:   3'- -CCCGCGUGGu--CAGGGCCg---GUCGguUG- -5'
11409 5' -62 NC_003085.1 + 31789 0.66 0.356488
Target:  5'- uGGGCGaAgCGG-CCCGGCC-GCUcGCg -3'
miRNA:   3'- -CCCGCgUgGUCaGGGCCGGuCGGuUG- -5'
11409 5' -62 NC_003085.1 + 32049 0.66 0.316285
Target:  5'- aGGCgGCACauccuggccuGGUCCCGGCgGuacgcucGCCAACa -3'
miRNA:   3'- cCCG-CGUGg---------UCAGGGCCGgU-------CGGUUG- -5'
11409 5' -62 NC_003085.1 + 33114 0.66 0.348329
Target:  5'- cGGUGC-CCuuGUCgUCGGCCAGagaCAGCg -3'
miRNA:   3'- cCCGCGuGGu-CAG-GGCCGGUCg--GUUG- -5'
11409 5' -62 NC_003085.1 + 34190 0.71 0.159944
Target:  5'- cGGGCGCGgCGGgugagCUCGGCCgcGGCCu-- -3'
miRNA:   3'- -CCCGCGUgGUCa----GGGCCGG--UCGGuug -5'
11409 5' -62 NC_003085.1 + 34280 0.75 0.078732
Target:  5'- uGGCGCACCGGcucagCCgGGCC-GUCAGCg -3'
miRNA:   3'- cCCGCGUGGUCa----GGgCCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 34311 0.67 0.309556
Target:  5'- cGGGCaggGCACCGaggcGUCCa-GCuuCAGCCAGCa -3'
miRNA:   3'- -CCCG---CGUGGU----CAGGgcCG--GUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 34405 0.74 0.098247
Target:  5'- gGGGCggacgGCAUgGGgaUUCCGGCCAGCCAAa -3'
miRNA:   3'- -CCCG-----CGUGgUC--AGGGCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 34934 0.66 0.348329
Target:  5'- aGGCGCACgCGGcggaguUgCUGGCCGGCgGAg -3'
miRNA:   3'- cCCGCGUG-GUC------AgGGCCGGUCGgUUg -5'
11409 5' -62 NC_003085.1 + 35892 0.71 0.147657
Target:  5'- cGGGcCGCGgagucCCAGggccaugCCaCGGCCAGCCcGCa -3'
miRNA:   3'- -CCC-GCGU-----GGUCa------GG-GCCGGUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 36897 0.7 0.187312
Target:  5'- cGGUcCACC-GUCCCaGcCCGGCCAGCg -3'
miRNA:   3'- cCCGcGUGGuCAGGGcC-GGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 37069 0.67 0.294994
Target:  5'- cGGGUcgaGCAgCAGcaCCCGGCCcuuCCAGCg -3'
miRNA:   3'- -CCCG---CGUgGUCa-GGGCCGGuc-GGUUG- -5'
11409 5' -62 NC_003085.1 + 37406 0.68 0.234269
Target:  5'- gGGGCagguagugaccgauGCGCCAG-UgCGGCUAGCgAGCg -3'
miRNA:   3'- -CCCG--------------CGUGGUCaGgGCCGGUCGgUUG- -5'
11409 5' -62 NC_003085.1 + 37427 0.67 0.287915
Target:  5'- cGGCGCACgaAGUCgcgcagcaCCGGCaggugcGCCAGCg -3'
miRNA:   3'- cCCGCGUGg-UCAG--------GGCCGgu----CGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.