miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 12324 0.66 0.356488
Target:  5'- aGGGUGCccGCCGucgccGUgCCCGGCgugacgguGCCAGCa -3'
miRNA:   3'- -CCCGCG--UGGU-----CA-GGGCCGgu------CGGUUG- -5'
11409 5' -62 NC_003085.1 + 16525 0.67 0.294994
Target:  5'- aGGCGCGCCuGUUgagCCGGUC-GCCGu- -3'
miRNA:   3'- cCCGCGUGGuCAG---GGCCGGuCGGUug -5'
11409 5' -62 NC_003085.1 + 18167 0.66 0.324659
Target:  5'- cGGGCGCGCCuG-CCCGcGCUuaCCGGa -3'
miRNA:   3'- -CCCGCGUGGuCaGGGC-CGGucGGUUg -5'
11409 5' -62 NC_003085.1 + 18689 0.68 0.254522
Target:  5'- aGGGUGaCGCCGGUCagUGGCCcGCCc-- -3'
miRNA:   3'- -CCCGC-GUGGUCAGg-GCCGGuCGGuug -5'
11409 5' -62 NC_003085.1 + 19052 0.69 0.202489
Target:  5'- aGGGCGCucGCCAGUgCCGccuguuucuCCAGCCcaGGCa -3'
miRNA:   3'- -CCCGCG--UGGUCAgGGCc--------GGUCGG--UUG- -5'
11409 5' -62 NC_003085.1 + 19718 0.67 0.308815
Target:  5'- gGGGCGCgacggcgGCCAcGUCCUGGgCGacgacGCCGAg -3'
miRNA:   3'- -CCCGCG-------UGGU-CAGGGCCgGU-----CGGUUg -5'
11409 5' -62 NC_003085.1 + 20106 0.67 0.294994
Target:  5'- cGGGCG-GCCAuGUCCUGGUugaagaCGGCCuGCc -3'
miRNA:   3'- -CCCGCgUGGU-CAGGGCCG------GUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 20195 0.66 0.324659
Target:  5'- cGGUGCACgA--CUgGGCCAGCCAcgACg -3'
miRNA:   3'- cCCGCGUGgUcaGGgCCGGUCGGU--UG- -5'
11409 5' -62 NC_003085.1 + 20620 0.66 0.324659
Target:  5'- cGGGCgGCGCgGGUgcuugcuucCCCauGGCCuacuccuugAGCCAGCg -3'
miRNA:   3'- -CCCG-CGUGgUCA---------GGG--CCGG---------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 22469 0.67 0.27416
Target:  5'- -cGUGCACCAcUCgCGGuagcCCAGCCGGCu -3'
miRNA:   3'- ccCGCGUGGUcAGgGCC----GGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 24161 0.69 0.230151
Target:  5'- cGGCGUcguCCA--CCUGGCCGGCCGucGCg -3'
miRNA:   3'- cCCGCGu--GGUcaGGGCCGGUCGGU--UG- -5'
11409 5' -62 NC_003085.1 + 24227 0.69 0.20778
Target:  5'- cGGaGCGCACCAGggcggCgCCGGugaugagguaCCAGCCGuACu -3'
miRNA:   3'- -CC-CGCGUGGUCa----G-GGCC----------GGUCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 24673 0.67 0.280971
Target:  5'- cGGGCugagcgGCACCAuGUUCCGGuCCuuguGCgGGCg -3'
miRNA:   3'- -CCCG------CGUGGU-CAGGGCC-GGu---CGgUUG- -5'
11409 5' -62 NC_003085.1 + 24886 0.69 0.201966
Target:  5'- cGGCGC-CCAGUUCCagGGCCGccucaucGCCGAg -3'
miRNA:   3'- cCCGCGuGGUCAGGG--CCGGU-------CGGUUg -5'
11409 5' -62 NC_003085.1 + 25276 0.77 0.053176
Target:  5'- cGGCGCGCCcGUCUaccucaccgcgaCGGCCGGCCAGg -3'
miRNA:   3'- cCCGCGUGGuCAGG------------GCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 26109 0.7 0.187312
Target:  5'- gGGGCuGCGCCucggcggccggcGGcgCuuGGCCGGCCAGa -3'
miRNA:   3'- -CCCG-CGUGG------------UCa-GggCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 27009 0.66 0.348329
Target:  5'- uGGUGCACgGGcCuuGGUguGCCuGCg -3'
miRNA:   3'- cCCGCGUGgUCaGggCCGguCGGuUG- -5'
11409 5' -62 NC_003085.1 + 28718 0.7 0.177759
Target:  5'- cGGGCaGCAgCCGGUCCUGGagGGCguACu -3'
miRNA:   3'- -CCCG-CGU-GGUCAGGGCCggUCGguUG- -5'
11409 5' -62 NC_003085.1 + 29062 0.7 0.192256
Target:  5'- uGGC-CACCAG-CCUGaGCCAGCCu-- -3'
miRNA:   3'- cCCGcGUGGUCaGGGC-CGGUCGGuug -5'
11409 5' -62 NC_003085.1 + 29242 0.67 0.308815
Target:  5'- aGGGCagcgaggccuaccGCAacgcCCAGUCCgaauuCGGCCAGCagcgCAACg -3'
miRNA:   3'- -CCCG-------------CGU----GGUCAGG-----GCCGGUCG----GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.