miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 43452 0.7 0.192256
Target:  5'- cGGGCGUAcauccgcgcCCAG-CCguaGGCgAGCCAACu -3'
miRNA:   3'- -CCCGCGU---------GGUCaGGg--CCGgUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 29062 0.7 0.192256
Target:  5'- uGGC-CACCAG-CCUGaGCCAGCCu-- -3'
miRNA:   3'- cCCGcGUGGUCaGGGC-CGGUCGGuug -5'
11409 5' -62 NC_003085.1 + 29479 0.7 0.192256
Target:  5'- cGGGCGCguaCAGUCCUacugacuaccuuGGCgCGGCCAu- -3'
miRNA:   3'- -CCCGCGug-GUCAGGG------------CCG-GUCGGUug -5'
11409 5' -62 NC_003085.1 + 29401 0.7 0.197314
Target:  5'- -uGCuGCGCCAG-CgCGGCCAGCCcauGGCg -3'
miRNA:   3'- ccCG-CGUGGUCaGgGCCGGUCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 24886 0.69 0.201966
Target:  5'- cGGCGC-CCAGUUCCagGGCCGccucaucGCCGAg -3'
miRNA:   3'- cCCGCGuGGUCAGGG--CCGGU-------CGGUUg -5'
11409 5' -62 NC_003085.1 + 19052 0.69 0.202489
Target:  5'- aGGGCGCucGCCAGUgCCGccuguuucuCCAGCCcaGGCa -3'
miRNA:   3'- -CCCGCG--UGGUCAgGGCc--------GGUCGG--UUG- -5'
11409 5' -62 NC_003085.1 + 44665 0.69 0.202489
Target:  5'- cGGGCuuuGgGCCcGUCCUGGCgGauGCCAGCa -3'
miRNA:   3'- -CCCG---CgUGGuCAGGGCCGgU--CGGUUG- -5'
11409 5' -62 NC_003085.1 + 24227 0.69 0.20778
Target:  5'- cGGaGCGCACCAGggcggCgCCGGugaugagguaCCAGCCGuACu -3'
miRNA:   3'- -CC-CGCGUGGUCa----G-GGCC----------GGUCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 30382 0.69 0.20778
Target:  5'- cGGCGCACUccGUCCgGGCCcggcGCCuGCu -3'
miRNA:   3'- cCCGCGUGGu-CAGGgCCGGu---CGGuUG- -5'
11409 5' -62 NC_003085.1 + 31309 0.69 0.20993
Target:  5'- aGGCGCGCCcgacaccgaagccucAgcagacGUCCCaGGCCGGCCGu- -3'
miRNA:   3'- cCCGCGUGG---------------U------CAGGG-CCGGUCGGUug -5'
11409 5' -62 NC_003085.1 + 42309 0.69 0.21319
Target:  5'- aGGUGCagguGCCAGUCCUcacacaGGUC-GCCAGCa -3'
miRNA:   3'- cCCGCG----UGGUCAGGG------CCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 9382 0.69 0.21319
Target:  5'- aGGGCuGCuUgAGUaCCGGCCAGCgCGGCu -3'
miRNA:   3'- -CCCG-CGuGgUCAgGGCCGGUCG-GUUG- -5'
11409 5' -62 NC_003085.1 + 6338 0.69 0.218721
Target:  5'- uGGGCGCGCUcuacgccaaGGcuguUCCCGGCguGCUgcuGGCg -3'
miRNA:   3'- -CCCGCGUGG---------UC----AGGGCCGguCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 681 0.69 0.224374
Target:  5'- cGGC-CACCuGUCCCGcGuCCGGCCucggGCg -3'
miRNA:   3'- cCCGcGUGGuCAGGGC-C-GGUCGGu---UG- -5'
11409 5' -62 NC_003085.1 + 24161 0.69 0.230151
Target:  5'- cGGCGUcguCCA--CCUGGCCGGCCGucGCg -3'
miRNA:   3'- cCCGCGu--GGUcaGGGCCGGUCGGU--UG- -5'
11409 5' -62 NC_003085.1 + 48688 0.69 0.230151
Target:  5'- uGGGCGCACCGuugCgCGGCgUGGCgGACu -3'
miRNA:   3'- -CCCGCGUGGUca-GgGCCG-GUCGgUUG- -5'
11409 5' -62 NC_003085.1 + 37406 0.68 0.234269
Target:  5'- gGGGCagguagugaccgauGCGCCAG-UgCGGCUAGCgAGCg -3'
miRNA:   3'- -CCCG--------------CGUGGUCaGgGCCGGUCGgUUG- -5'
11409 5' -62 NC_003085.1 + 45601 0.68 0.235457
Target:  5'- cGGGCGCGCCgucgacgcgccguGGUCCUGGaUgGGCaguGCg -3'
miRNA:   3'- -CCCGCGUGG-------------UCAGGGCC-GgUCGgu-UG- -5'
11409 5' -62 NC_003085.1 + 39766 0.68 0.236053
Target:  5'- cGGCGCuCCAGUCUgcagggacGCCAGCCggUg -3'
miRNA:   3'- cCCGCGuGGUCAGGgc------CGGUCGGuuG- -5'
11409 5' -62 NC_003085.1 + 43902 0.68 0.242081
Target:  5'- uGGCGCACC-GUCgCGGCgccaGGCCcuuuGCg -3'
miRNA:   3'- cCCGCGUGGuCAGgGCCGg---UCGGu---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.