miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 43618 0.72 0.136235
Target:  5'- cGGUGCcgucCCAGUCCCGGaCCugcagGGCUGACg -3'
miRNA:   3'- cCCGCGu---GGUCAGGGCC-GG-----UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 24673 0.67 0.280971
Target:  5'- cGGGCugagcgGCACCAuGUUCCGGuCCuuguGCgGGCg -3'
miRNA:   3'- -CCCG------CGUGGU-CAGGGCC-GGu---CGgUUG- -5'
11409 5' -62 NC_003085.1 + 43902 0.68 0.242081
Target:  5'- uGGCGCACC-GUCgCGGCgccaGGCCcuuuGCg -3'
miRNA:   3'- cCCGCGUGGuCAGgGCCGg---UCGGu---UG- -5'
11409 5' -62 NC_003085.1 + 6338 0.69 0.218721
Target:  5'- uGGGCGCGCUcuacgccaaGGcuguUCCCGGCguGCUgcuGGCg -3'
miRNA:   3'- -CCCGCGUGG---------UC----AGGGCCGguCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 19052 0.69 0.202489
Target:  5'- aGGGCGCucGCCAGUgCCGccuguuucuCCAGCCcaGGCa -3'
miRNA:   3'- -CCCGCG--UGGUCAgGGCc--------GGUCGG--UUG- -5'
11409 5' -62 NC_003085.1 + 47658 1.11 0.000131
Target:  5'- gGGGCGCACCAGUCCCGGCCAGCCAACg -3'
miRNA:   3'- -CCCGCGUGGUCAGGGCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 38986 0.71 0.147657
Target:  5'- -cGCGCAgCAGg-UCGGCCAGCCGAg -3'
miRNA:   3'- ccCGCGUgGUCagGGCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 34190 0.71 0.159944
Target:  5'- cGGGCGCGgCGGgugagCUCGGCCgcGGCCu-- -3'
miRNA:   3'- -CCCGCGUgGUCa----GGGCCGG--UCGGuug -5'
11409 5' -62 NC_003085.1 + 8189 0.7 0.168641
Target:  5'- uGGGCGCugugcauggcccGCCAGUCCa-GCCuGCCGcGCg -3'
miRNA:   3'- -CCCGCG------------UGGUCAGGgcCGGuCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 28718 0.7 0.177759
Target:  5'- cGGGCaGCAgCCGGUCCUGGagGGCguACu -3'
miRNA:   3'- -CCCG-CGU-GGUCAGGGCCggUCGguUG- -5'
11409 5' -62 NC_003085.1 + 48945 0.67 0.309556
Target:  5'- aGGGCaGCGCgCA--UCCGGuCCGGCCcGCg -3'
miRNA:   3'- -CCCG-CGUG-GUcaGGGCC-GGUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 11129 0.67 0.309556
Target:  5'- gGGGCGCGCgucgucUCUCGGaUguGCCGACa -3'
miRNA:   3'- -CCCGCGUGguc---AGGGCC-GguCGGUUG- -5'
11409 5' -62 NC_003085.1 + 34311 0.67 0.309556
Target:  5'- cGGGCaggGCACCGaggcGUCCa-GCuuCAGCCAGCa -3'
miRNA:   3'- -CCCG---CGUGGU----CAGGgcCG--GUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 29242 0.67 0.308815
Target:  5'- aGGGCagcgaggccuaccGCAacgcCCAGUCCgaauuCGGCCAGCagcgCAACg -3'
miRNA:   3'- -CCCG-------------CGU----GGUCAGG-----GCCGGUCG----GUUG- -5'
11409 5' -62 NC_003085.1 + 10641 0.67 0.287915
Target:  5'- gGGGCGCcggcagaggcaGCCaaAGUCCUcggGGCU-GCCGGCg -3'
miRNA:   3'- -CCCGCG-----------UGG--UCAGGG---CCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 5370 0.71 0.151654
Target:  5'- cGGCGCGuCCGGUCCCgucaccgucgaGGCCuacgccGCCAAg -3'
miRNA:   3'- cCCGCGU-GGUCAGGG-----------CCGGu-----CGGUUg -5'
11409 5' -62 NC_003085.1 + 46687 0.66 0.331632
Target:  5'- uGGaGCGCcgccgcuGCCuGcUUCCGGCCAGCgGAg -3'
miRNA:   3'- -CC-CGCG-------UGGuC-AGGGCCGGUCGgUUg -5'
11409 5' -62 NC_003085.1 + 44665 0.69 0.202489
Target:  5'- cGGGCuuuGgGCCcGUCCUGGCgGauGCCAGCa -3'
miRNA:   3'- -CCCG---CgUGGuCAGGGCCGgU--CGGUUG- -5'
11409 5' -62 NC_003085.1 + 31309 0.69 0.20993
Target:  5'- aGGCGCGCCcgacaccgaagccucAgcagacGUCCCaGGCCGGCCGu- -3'
miRNA:   3'- cCCGCGUGG---------------U------CAGGG-CCGGUCGGUug -5'
11409 5' -62 NC_003085.1 + 42309 0.69 0.21319
Target:  5'- aGGUGCagguGCCAGUCCUcacacaGGUC-GCCAGCa -3'
miRNA:   3'- cCCGCG----UGGUCAGGG------CCGGuCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.