miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 37427 0.67 0.287915
Target:  5'- cGGCGCACgaAGUCgcgcagcaCCGGCaggugcGCCAGCg -3'
miRNA:   3'- cCCGCGUGg-UCAG--------GGCCGgu----CGGUUG- -5'
11409 5' -62 NC_003085.1 + 16525 0.67 0.294994
Target:  5'- aGGCGCGCCuGUUgagCCGGUC-GCCGu- -3'
miRNA:   3'- cCCGCGUGGuCAG---GGCCGGuCGGUug -5'
11409 5' -62 NC_003085.1 + 42899 0.66 0.323891
Target:  5'- gGGGCGCugucacggguuguGCCAGUCaaCUGcGCCAGuCCGu- -3'
miRNA:   3'- -CCCGCG-------------UGGUCAG--GGC-CGGUC-GGUug -5'
11409 5' -62 NC_003085.1 + 42716 0.66 0.340304
Target:  5'- cGGCGCGgCAGg-CCGGgCAGUCGGa -3'
miRNA:   3'- cCCGCGUgGUCagGGCCgGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 30382 0.69 0.20778
Target:  5'- cGGCGCACUccGUCCgGGCCcggcGCCuGCu -3'
miRNA:   3'- cCCGCGUGGu-CAGGgCCGGu---CGGuUG- -5'
11409 5' -62 NC_003085.1 + 8623 0.68 0.266822
Target:  5'- aGGUugGCCAG-CCCGGCCgccgucagguacaGGCCGGCc -3'
miRNA:   3'- cCCGcgUGGUCaGGGCCGG-------------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 37069 0.67 0.294994
Target:  5'- cGGGUcgaGCAgCAGcaCCCGGCCcuuCCAGCg -3'
miRNA:   3'- -CCCG---CGUgGUCa-GGGCCGGuc-GGUUG- -5'
11409 5' -62 NC_003085.1 + 11132 0.66 0.348329
Target:  5'- -cGCGUGCCAGgCCCGaGCUuuaGGCaCGACg -3'
miRNA:   3'- ccCGCGUGGUCaGGGC-CGG---UCG-GUUG- -5'
11409 5' -62 NC_003085.1 + 45228 0.67 0.27416
Target:  5'- -aGCGCugCGG-CCCGGCUgacGCuCAGCg -3'
miRNA:   3'- ccCGCGugGUCaGGGCCGGu--CG-GUUG- -5'
11409 5' -62 NC_003085.1 + 33114 0.66 0.348329
Target:  5'- cGGUGC-CCuuGUCgUCGGCCAGagaCAGCg -3'
miRNA:   3'- cCCGCGuGGu-CAG-GGCCGGUCg--GUUG- -5'
11409 5' -62 NC_003085.1 + 20106 0.67 0.294994
Target:  5'- cGGGCG-GCCAuGUCCUGGUugaagaCGGCCuGCc -3'
miRNA:   3'- -CCCGCgUGGU-CAGGGCCG------GUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 24673 0.67 0.280971
Target:  5'- cGGGCugagcgGCACCAuGUUCCGGuCCuuguGCgGGCg -3'
miRNA:   3'- -CCCG------CGUGGU-CAGGGCC-GGu---CGgUUG- -5'
11409 5' -62 NC_003085.1 + 19718 0.67 0.308815
Target:  5'- gGGGCGCgacggcgGCCAcGUCCUGGgCGacgacGCCGAg -3'
miRNA:   3'- -CCCGCG-------UGGU-CAGGGCCgGU-----CGGUUg -5'
11409 5' -62 NC_003085.1 + 32049 0.66 0.316285
Target:  5'- aGGCgGCACauccuggccuGGUCCCGGCgGuacgcucGCCAACa -3'
miRNA:   3'- cCCG-CGUGg---------UCAGGGCCGgU-------CGGUUG- -5'
11409 5' -62 NC_003085.1 + 1938 0.66 0.332414
Target:  5'- cGGGCuCGUCGGUCCCGG-UGGCCGu- -3'
miRNA:   3'- -CCCGcGUGGUCAGGGCCgGUCGGUug -5'
11409 5' -62 NC_003085.1 + 40963 0.66 0.340304
Target:  5'- uGGUGCGCgucGUaCUGGCgGGCCAGCg -3'
miRNA:   3'- cCCGCGUGgu-CAgGGCCGgUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 43452 0.7 0.192256
Target:  5'- cGGGCGUAcauccgcgcCCAG-CCguaGGCgAGCCAACu -3'
miRNA:   3'- -CCCGCGU---------GGUCaGGg--CCGgUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 24227 0.69 0.20778
Target:  5'- cGGaGCGCACCAGggcggCgCCGGugaugagguaCCAGCCGuACu -3'
miRNA:   3'- -CC-CGCGUGGUCa----G-GGCC----------GGUCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 45601 0.68 0.235457
Target:  5'- cGGGCGCGCCgucgacgcgccguGGUCCUGGaUgGGCaguGCg -3'
miRNA:   3'- -CCCGCGUGG-------------UCAGGGCC-GgUCGgu-UG- -5'
11409 5' -62 NC_003085.1 + 4098 0.68 0.254522
Target:  5'- uGGGUGgGCCgggcGGUCCaGGCU-GCCAGCc -3'
miRNA:   3'- -CCCGCgUGG----UCAGGgCCGGuCGGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.