miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 4786 0.66 0.359788
Target:  5'- cGGGUGCuggcauccGCCAGgacgggcccaaagCCCGGCaccgacacucugAGCCAACc -3'
miRNA:   3'- -CCCGCG--------UGGUCa------------GGGCCGg-----------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 9170 0.67 0.302207
Target:  5'- aGGGCGaCGCUg--CCCaGGCCGGCgcaGACg -3'
miRNA:   3'- -CCCGC-GUGGucaGGG-CCGGUCGg--UUG- -5'
11409 5' -62 NC_003085.1 + 37069 0.67 0.294994
Target:  5'- cGGGUcgaGCAgCAGcaCCCGGCCcuuCCAGCg -3'
miRNA:   3'- -CCCG---CGUgGUCa-GGGCCGGuc-GGUUG- -5'
11409 5' -62 NC_003085.1 + 47658 1.11 0.000131
Target:  5'- gGGGCGCACCAGUCCCGGCCAGCCAACg -3'
miRNA:   3'- -CCCGCGUGGUCAGGGCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 11132 0.66 0.348329
Target:  5'- -cGCGUGCCAGgCCCGaGCUuuaGGCaCGACg -3'
miRNA:   3'- ccCGCGUGGUCaGGGC-CGG---UCG-GUUG- -5'
11409 5' -62 NC_003085.1 + 42716 0.66 0.340304
Target:  5'- cGGCGCGgCAGg-CCGGgCAGUCGGa -3'
miRNA:   3'- cCCGCGUgGUCagGGCCgGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 40272 0.66 0.340304
Target:  5'- aGGGCGCAggAGUaCCCGcGCCGaCCcACa -3'
miRNA:   3'- -CCCGCGUggUCA-GGGC-CGGUcGGuUG- -5'
11409 5' -62 NC_003085.1 + 38773 0.66 0.340304
Target:  5'- cGGGcCGCGCgCAGggCUGGUguGuCCAGCa -3'
miRNA:   3'- -CCC-GCGUG-GUCagGGCCGguC-GGUUG- -5'
11409 5' -62 NC_003085.1 + 20620 0.66 0.324659
Target:  5'- cGGGCgGCGCgGGUgcuugcuucCCCauGGCCuacuccuugAGCCAGCg -3'
miRNA:   3'- -CCCG-CGUGgUCA---------GGG--CCGG---------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 19718 0.67 0.308815
Target:  5'- gGGGCGCgacggcgGCCAcGUCCUGGgCGacgacGCCGAg -3'
miRNA:   3'- -CCCGCG-------UGGU-CAGGGCCgGU-----CGGUUg -5'
11409 5' -62 NC_003085.1 + 32049 0.66 0.316285
Target:  5'- aGGCgGCACauccuggccuGGUCCCGGCgGuacgcucGCCAACa -3'
miRNA:   3'- cCCG-CGUGg---------UCAGGGCCGgU-------CGGUUG- -5'
11409 5' -62 NC_003085.1 + 18167 0.66 0.324659
Target:  5'- cGGGCGCGCCuG-CCCGcGCUuaCCGGa -3'
miRNA:   3'- -CCCGCGUGGuCaGGGC-CGGucGGUUg -5'
11409 5' -62 NC_003085.1 + 12324 0.66 0.356488
Target:  5'- aGGGUGCccGCCGucgccGUgCCCGGCgugacgguGCCAGCa -3'
miRNA:   3'- -CCCGCG--UGGU-----CA-GGGCCGgu------CGGUUG- -5'
11409 5' -62 NC_003085.1 + 42351 0.67 0.309556
Target:  5'- cGGCGCgugACCGucUUCCGGCCGGCgAGg -3'
miRNA:   3'- cCCGCG---UGGUc-AGGGCCGGUCGgUUg -5'
11409 5' -62 NC_003085.1 + 12056 0.66 0.356488
Target:  5'- uGGCGCAUCGGUcacuaccugcCCCGGCguGaCGAg -3'
miRNA:   3'- cCCGCGUGGUCA----------GGGCCGguCgGUUg -5'
11409 5' -62 NC_003085.1 + 1938 0.66 0.332414
Target:  5'- cGGGCuCGUCGGUCCCGG-UGGCCGu- -3'
miRNA:   3'- -CCCGcGUGGUCAGGGCCgGUCGGUug -5'
11409 5' -62 NC_003085.1 + 44106 0.67 0.309556
Target:  5'- cGGaCGCGCCgAGUCCCuGGUCcuucuccgcGGCCAcGCg -3'
miRNA:   3'- cCC-GCGUGG-UCAGGG-CCGG---------UCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 42458 0.67 0.294994
Target:  5'- aGGGCGCcggugaugGCagugaggAGUCCgaagCGGCCggAGCCAACg -3'
miRNA:   3'- -CCCGCG--------UGg------UCAGG----GCCGG--UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 33114 0.66 0.348329
Target:  5'- cGGUGC-CCuuGUCgUCGGCCAGagaCAGCg -3'
miRNA:   3'- cCCGCGuGGu-CAG-GGCCGGUCg--GUUG- -5'
11409 5' -62 NC_003085.1 + 40963 0.66 0.340304
Target:  5'- uGGUGCGCgucGUaCUGGCgGGCCAGCg -3'
miRNA:   3'- cCCGCGUGgu-CAgGGCCGgUCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.