miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 24673 0.67 0.280971
Target:  5'- cGGGCugagcgGCACCAuGUUCCGGuCCuuguGCgGGCg -3'
miRNA:   3'- -CCCG------CGUGGU-CAGGGCC-GGu---CGgUUG- -5'
11409 5' -62 NC_003085.1 + 22469 0.67 0.27416
Target:  5'- -cGUGCACCAcUCgCGGuagcCCAGCCGGCu -3'
miRNA:   3'- ccCGCGUGGUcAGgGCC----GGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 8105 0.67 0.27416
Target:  5'- uGGGUG-ACgCGG-CCCGGCCuGCCGu- -3'
miRNA:   3'- -CCCGCgUG-GUCaGGGCCGGuCGGUug -5'
11409 5' -62 NC_003085.1 + 45228 0.67 0.27416
Target:  5'- -aGCGCugCGG-CCCGGCUgacGCuCAGCg -3'
miRNA:   3'- ccCGCGugGUCaGGGCCGGu--CG-GUUG- -5'
11409 5' -62 NC_003085.1 + 41725 0.68 0.270137
Target:  5'- cGGCcuccaacuucgGCACCgAGUuuuccugcucggacgCCCGGCCAGCCu-- -3'
miRNA:   3'- cCCG-----------CGUGG-UCA---------------GGGCCGGUCGGuug -5'
11409 5' -62 NC_003085.1 + 8623 0.68 0.266822
Target:  5'- aGGUugGCCAG-CCCGGCCgccgucagguacaGGCCGGCc -3'
miRNA:   3'- cCCGcgUGGUCaGGGCCGG-------------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 410 0.68 0.260936
Target:  5'- -uGCGCucccuggacGCCAGUCUCGGCCGcGUCuACg -3'
miRNA:   3'- ccCGCG---------UGGUCAGGGCCGGU-CGGuUG- -5'
11409 5' -62 NC_003085.1 + 4098 0.68 0.254522
Target:  5'- uGGGUGgGCCgggcGGUCCaGGCU-GCCAGCc -3'
miRNA:   3'- -CCCGCgUGG----UCAGGgCCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 18689 0.68 0.254522
Target:  5'- aGGGUGaCGCCGGUCagUGGCCcGCCc-- -3'
miRNA:   3'- -CCCGC-GUGGUCAGg-GCCGGuCGGuug -5'
11409 5' -62 NC_003085.1 + 43902 0.68 0.242081
Target:  5'- uGGCGCACC-GUCgCGGCgccaGGCCcuuuGCg -3'
miRNA:   3'- cCCGCGUGGuCAGgGCCGg---UCGGu---UG- -5'
11409 5' -62 NC_003085.1 + 39766 0.68 0.236053
Target:  5'- cGGCGCuCCAGUCUgcagggacGCCAGCCggUg -3'
miRNA:   3'- cCCGCGuGGUCAGGgc------CGGUCGGuuG- -5'
11409 5' -62 NC_003085.1 + 45601 0.68 0.235457
Target:  5'- cGGGCGCGCCgucgacgcgccguGGUCCUGGaUgGGCaguGCg -3'
miRNA:   3'- -CCCGCGUGG-------------UCAGGGCC-GgUCGgu-UG- -5'
11409 5' -62 NC_003085.1 + 37406 0.68 0.234269
Target:  5'- gGGGCagguagugaccgauGCGCCAG-UgCGGCUAGCgAGCg -3'
miRNA:   3'- -CCCG--------------CGUGGUCaGgGCCGGUCGgUUG- -5'
11409 5' -62 NC_003085.1 + 48688 0.69 0.230151
Target:  5'- uGGGCGCACCGuugCgCGGCgUGGCgGACu -3'
miRNA:   3'- -CCCGCGUGGUca-GgGCCG-GUCGgUUG- -5'
11409 5' -62 NC_003085.1 + 24161 0.69 0.230151
Target:  5'- cGGCGUcguCCA--CCUGGCCGGCCGucGCg -3'
miRNA:   3'- cCCGCGu--GGUcaGGGCCGGUCGGU--UG- -5'
11409 5' -62 NC_003085.1 + 681 0.69 0.224374
Target:  5'- cGGC-CACCuGUCCCGcGuCCGGCCucggGCg -3'
miRNA:   3'- cCCGcGUGGuCAGGGC-C-GGUCGGu---UG- -5'
11409 5' -62 NC_003085.1 + 6338 0.69 0.218721
Target:  5'- uGGGCGCGCUcuacgccaaGGcuguUCCCGGCguGCUgcuGGCg -3'
miRNA:   3'- -CCCGCGUGG---------UC----AGGGCCGguCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 42309 0.69 0.21319
Target:  5'- aGGUGCagguGCCAGUCCUcacacaGGUC-GCCAGCa -3'
miRNA:   3'- cCCGCG----UGGUCAGGG------CCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 9382 0.69 0.21319
Target:  5'- aGGGCuGCuUgAGUaCCGGCCAGCgCGGCu -3'
miRNA:   3'- -CCCG-CGuGgUCAgGGCCGGUCG-GUUG- -5'
11409 5' -62 NC_003085.1 + 31309 0.69 0.20993
Target:  5'- aGGCGCGCCcgacaccgaagccucAgcagacGUCCCaGGCCGGCCGu- -3'
miRNA:   3'- cCCGCGUGG---------------U------CAGGG-CCGGUCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.