miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 19904 0.66 0.516988
Target:  5'- -cGAAGaCGuCCGCGUUGGccugguugcUGGCCugcCACu -3'
miRNA:   3'- gaCUUC-GC-GGCGCGACU---------ACCGGu--GUG- -5'
11411 3' -58.1 NC_003085.1 + 42496 0.66 0.516988
Target:  5'- gUGAGGCGaauCGCcgGAUGGCUucGCACg -3'
miRNA:   3'- gACUUCGCggcGCGa-CUACCGG--UGUG- -5'
11411 3' -58.1 NC_003085.1 + 32238 0.66 0.514881
Target:  5'- -cGggGCGCCGCGUgcucaccaGCgGCGCu -3'
miRNA:   3'- gaCuuCGCGGCGCGacuac---CGgUGUG- -5'
11411 3' -58.1 NC_003085.1 + 1553 0.66 0.506493
Target:  5'- aCUGAGuGCGagaCGaCGCUGAcacUGGCCAgAg -3'
miRNA:   3'- -GACUU-CGCg--GC-GCGACU---ACCGGUgUg -5'
11411 3' -58.1 NC_003085.1 + 26093 0.66 0.506493
Target:  5'- uUGggGuCGaaGUGCUGG-GGCUGCGCc -3'
miRNA:   3'- gACuuC-GCggCGCGACUaCCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 2359 0.66 0.506493
Target:  5'- -gGAGGCGCaGUGC-GA-GGCCGCGg -3'
miRNA:   3'- gaCUUCGCGgCGCGaCUaCCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 11441 0.66 0.49609
Target:  5'- -gGAAGCgGUCGcCGUUGG-GGCCgACGCg -3'
miRNA:   3'- gaCUUCG-CGGC-GCGACUaCCGG-UGUG- -5'
11411 3' -58.1 NC_003085.1 + 22033 0.66 0.49609
Target:  5'- -cGAAGgGCUGCGCUGuaccggcgauUGcGCC-CGCg -3'
miRNA:   3'- gaCUUCgCGGCGCGACu---------AC-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 7642 0.66 0.49609
Target:  5'- -gGGAGCGCaucaacgGCGCcGAguccugGGCCACGa -3'
miRNA:   3'- gaCUUCGCGg------CGCGaCUa-----CCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 8818 0.66 0.49609
Target:  5'- aCUGAGGCuGCCGaGac-AUGGCUGCGCg -3'
miRNA:   3'- -GACUUCG-CGGCgCgacUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 19518 0.66 0.49609
Target:  5'- gCUGGAGgGCCuGUGCc-AUGGCCAUcuGCu -3'
miRNA:   3'- -GACUUCgCGG-CGCGacUACCGGUG--UG- -5'
11411 3' -58.1 NC_003085.1 + 31491 0.66 0.49609
Target:  5'- cCUGcGGC-CCGCGCUGccggcgcuucagGUGGCCcCAg -3'
miRNA:   3'- -GACuUCGcGGCGCGAC------------UACCGGuGUg -5'
11411 3' -58.1 NC_003085.1 + 4212 0.66 0.495055
Target:  5'- gCUGAcGCGCgGCggguuacGCUGAgcgucagccgGGCCGCAg -3'
miRNA:   3'- -GACUuCGCGgCG-------CGACUa---------CCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 47800 0.66 0.495055
Target:  5'- gUGAcGuCGCCGCGUUGGUaguagggacggcaGGCCAUg- -3'
miRNA:   3'- gACUuC-GCGGCGCGACUA-------------CCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 28850 0.66 0.489895
Target:  5'- -cGAAGCGCCG-GCUGAcgcucaccuugggcgUuuGGCCGUACa -3'
miRNA:   3'- gaCUUCGCGGCgCGACU---------------A--CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 23364 0.66 0.485785
Target:  5'- -gGAGGCaGCCGUGUcccaGGCCAUGCg -3'
miRNA:   3'- gaCUUCG-CGGCGCGacuaCCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 16156 0.66 0.475583
Target:  5'- cCUGAA-UGaCCGUGacgccgUGGUGGCCGCGCu -3'
miRNA:   3'- -GACUUcGC-GGCGCg-----ACUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 9973 0.66 0.475583
Target:  5'- -aGAAGCgGCCagcuucCGCUGAcGGCCuACGCc -3'
miRNA:   3'- gaCUUCG-CGGc-----GCGACUaCCGG-UGUG- -5'
11411 3' -58.1 NC_003085.1 + 8187 0.66 0.475583
Target:  5'- gCUG-GGCGCUGUGC--AUGGCC-CGCc -3'
miRNA:   3'- -GACuUCGCGGCGCGacUACCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 48746 0.66 0.474569
Target:  5'- aCUGAGGCGCgGguggaccUGCUca-GGCCGCGCc -3'
miRNA:   3'- -GACUUCGCGgC-------GCGAcuaCCGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.