Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11411 | 5' | -54.6 | NC_003085.1 | + | 39731 | 0.69 | 0.545619 |
Target: 5'- cUGGacuccaUGACGCcgAGgacaCAcAGGCGUUCCg -3' miRNA: 3'- -ACCg-----ACUGCGuaUCa---GU-UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 32694 | 0.69 | 0.50253 |
Target: 5'- -uGCUGGCGCGUcGUCuGGuaGCGCUCg -3' miRNA: 3'- acCGACUGCGUAuCAGuUC--CGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 2472 | 0.7 | 0.440915 |
Target: 5'- --aCUGACGCAUAGUguggccaucagCGcGGCGCUUCa -3' miRNA: 3'- accGACUGCGUAUCA-----------GUuCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 43587 | 0.66 | 0.723361 |
Target: 5'- cGGCgccACgGCAgaGGUCGcAGGCGCUgCCa -3' miRNA: 3'- aCCGac-UG-CGUa-UCAGU-UCCGCGA-GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 40775 | 0.66 | 0.712473 |
Target: 5'- gUGGCUGACGU-UGG-CGGacggcaccccGGCGC-CCa -3' miRNA: 3'- -ACCGACUGCGuAUCaGUU----------CCGCGaGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 8149 | 0.66 | 0.712473 |
Target: 5'- -aGCgccGCGCAUcaggcgaacgAGUCAAGGUGCUUg -3' miRNA: 3'- acCGac-UGCGUA----------UCAGUUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 46643 | 0.71 | 0.39299 |
Target: 5'- gGGCaGACGUGUugccAGUgaugcCGAGGCGCUUCg -3' miRNA: 3'- aCCGaCUGCGUA----UCA-----GUUCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 28517 | 0.7 | 0.440915 |
Target: 5'- aGGCggugGACGC---GUCAGGGCGaaUCCg -3' miRNA: 3'- aCCGa---CUGCGuauCAGUUCCGCg-AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 21636 | 0.69 | 0.487796 |
Target: 5'- cGGCcaUGGCGCAgggGGUgAAGGCGaaguucggcagcaUCCg -3' miRNA: 3'- aCCG--ACUGCGUa--UCAgUUCCGCg------------AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 30337 | 0.69 | 0.491985 |
Target: 5'- cUGGCgGACGCu--GUCGcgGGGCGCa-- -3' miRNA: 3'- -ACCGaCUGCGuauCAGU--UCCGCGagg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 32145 | 0.69 | 0.50253 |
Target: 5'- cGGCUGgugGCGCGgugGGUUAcGGCGUcggCCa -3' miRNA: 3'- aCCGAC---UGCGUa--UCAGUuCCGCGa--GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 11407 | 0.69 | 0.534723 |
Target: 5'- cGGCUGACGCAccGcCGcgguGGCuGCUUCu -3' miRNA: 3'- aCCGACUGCGUauCaGUu---CCG-CGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 13914 | 0.69 | 0.534723 |
Target: 5'- cGGCgUGcGCGCGUuucGGaCGGGGCGCgcgCCg -3' miRNA: 3'- aCCG-AC-UGCGUA---UCaGUUCCGCGa--GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 47736 | 0.68 | 0.599874 |
Target: 5'- gGGCgcgGuGCGCGUAgcGUCGcaauucgacggccAGGCGCUCg -3' miRNA: 3'- aCCGa--C-UGCGUAU--CAGU-------------UCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 12775 | 0.67 | 0.612186 |
Target: 5'- gGGgUGAUGCcccugccgccGUuGUCGggcAGGUGCUCCa -3' miRNA: 3'- aCCgACUGCG----------UAuCAGU---UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 8245 | 0.67 | 0.645834 |
Target: 5'- aGGCUGAgCGCAgcgAGUUccggAGGGUGCcaugagCCc -3' miRNA: 3'- aCCGACU-GCGUa--UCAG----UUCCGCGa-----GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 33109 | 0.67 | 0.657039 |
Target: 5'- cUGGgUGGCGCu--GUCGAa-CGCUCCc -3' miRNA: 3'- -ACCgACUGCGuauCAGUUccGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 41810 | 0.67 | 0.668219 |
Target: 5'- aGGCUcGCGCAU-GUC--GGCGCcgCCc -3' miRNA: 3'- aCCGAcUGCGUAuCAGuuCCGCGa-GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 11884 | 0.66 | 0.690463 |
Target: 5'- cGcCUGagcGCGCcgAGuUCAuggccAGGCGCUCCa -3' miRNA: 3'- aCcGAC---UGCGuaUC-AGU-----UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 41151 | 0.66 | 0.694887 |
Target: 5'- cUGGCcgGAUGCcuccaacggcuaccUGGgCAAGGgGCUCCa -3' miRNA: 3'- -ACCGa-CUGCGu-------------AUCaGUUCCgCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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