miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 5' -54.6 NC_003085.1 + 28858 0.69 0.530386
Target:  5'- cGGCUGACGCucaccuuGGGCGUUUg -3'
miRNA:   3'- aCCGACUGCGuaucaguUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 30337 0.69 0.491985
Target:  5'- cUGGCgGACGCu--GUCGcgGGGCGCa-- -3'
miRNA:   3'- -ACCGaCUGCGuauCAGU--UCCGCGagg -5'
11411 5' -54.6 NC_003085.1 + 30653 0.7 0.481544
Target:  5'- gUGGCgaguCGCugcGG-CAGGGCGCUCUg -3'
miRNA:   3'- -ACCGacu-GCGua-UCaGUUCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 31827 0.67 0.657039
Target:  5'- gUGGCUcACGCcug--CGcAGGUGCUCCg -3'
miRNA:   3'- -ACCGAcUGCGuaucaGU-UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 32145 0.69 0.50253
Target:  5'- cGGCUGgugGCGCGgugGGUUAcGGCGUcggCCa -3'
miRNA:   3'- aCCGAC---UGCGUa--UCAGUuCCGCGa--GG- -5'
11411 5' -54.6 NC_003085.1 + 32694 0.69 0.50253
Target:  5'- -uGCUGGCGCGUcGUCuGGuaGCGCUCg -3'
miRNA:   3'- acCGACUGCGUAuCAGuUC--CGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 33109 0.67 0.657039
Target:  5'- cUGGgUGGCGCu--GUCGAa-CGCUCCc -3'
miRNA:   3'- -ACCgACUGCGuauCAGUUccGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 33302 0.7 0.440915
Target:  5'- cGGCcaccacGGCGuCAcGGUCAuucAGGCGUUCCg -3'
miRNA:   3'- aCCGa-----CUGC-GUaUCAGU---UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 35372 0.69 0.532553
Target:  5'- uUGGUaGACGUucucccggcggAGUcCGAGGCGCUCg -3'
miRNA:   3'- -ACCGaCUGCGua---------UCA-GUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 38147 0.72 0.340138
Target:  5'- -uGCUGGCGU-UGGUgGuGGCGCUCCc -3'
miRNA:   3'- acCGACUGCGuAUCAgUuCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 38248 0.73 0.300173
Target:  5'- gGGCUGACGguUGcacGUCAuGGCGUgCCu -3'
miRNA:   3'- aCCGACUGCguAU---CAGUuCCGCGaGG- -5'
11411 5' -54.6 NC_003085.1 + 39480 0.7 0.471212
Target:  5'- -uGCcGACGUGcgcGUCGAGGCGCUCg -3'
miRNA:   3'- acCGaCUGCGUau-CAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 39731 0.69 0.545619
Target:  5'- cUGGacuccaUGACGCcgAGgacaCAcAGGCGUUCCg -3'
miRNA:   3'- -ACCg-----ACUGCGuaUCa---GU-UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 40332 0.68 0.600992
Target:  5'- gGGCUGGCGCGUGccUCAguGGGCGgUg- -3'
miRNA:   3'- aCCGACUGCGUAUc-AGU--UCCGCgAgg -5'
11411 5' -54.6 NC_003085.1 + 40775 0.66 0.712473
Target:  5'- gUGGCUGACGU-UGG-CGGacggcaccccGGCGC-CCa -3'
miRNA:   3'- -ACCGACUGCGuAUCaGUU----------CCGCGaGG- -5'
11411 5' -54.6 NC_003085.1 + 41151 0.66 0.694887
Target:  5'- cUGGCcgGAUGCcuccaacggcuaccUGGgCAAGGgGCUCCa -3'
miRNA:   3'- -ACCGa-CUGCGu-------------AUCaGUUCCgCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 41810 0.67 0.668219
Target:  5'- aGGCUcGCGCAU-GUC--GGCGCcgCCc -3'
miRNA:   3'- aCCGAcUGCGUAuCAGuuCCGCGa-GG- -5'
11411 5' -54.6 NC_003085.1 + 43431 0.69 0.513172
Target:  5'- aGGUcauccUGGCGCGgcGUCcGGGCGUacaUCCg -3'
miRNA:   3'- aCCG-----ACUGCGUauCAGuUCCGCG---AGG- -5'
11411 5' -54.6 NC_003085.1 + 43587 0.66 0.723361
Target:  5'- cGGCgccACgGCAgaGGUCGcAGGCGCUgCCa -3'
miRNA:   3'- aCCGac-UG-CGUa-UCAGU-UCCGCGA-GG- -5'
11411 5' -54.6 NC_003085.1 + 43815 0.69 0.50253
Target:  5'- cGGCgcucGCGCA-AGUCAcaGGGCgagcGCUCCa -3'
miRNA:   3'- aCCGac--UGCGUaUCAGU--UCCG----CGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.