Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 43891 | 0.66 | 0.71138 |
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Target: 5'- gGGCguagacgUGGCGCAccGUCGcGGCGCcaggCCc -3' miRNA: 3'- aCCG-------ACUGCGUauCAGUuCCGCGa---GG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 45240 | 0.68 | 0.600992 |
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Target: 5'- cGGCUGACGCucagcGUAacccgccgcgcGUCAGcGGCguccugcgucuGCUCCa -3' miRNA: 3'- aCCGACUGCG-----UAU-----------CAGUU-CCG-----------CGAGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 45598 | 0.67 | 0.645834 |
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Target: 5'- cGGCgGGCGCGccGUCGAcGCGCcguggUCCu -3' miRNA: 3'- aCCGaCUGCGUauCAGUUcCGCG-----AGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 45913 | 0.68 | 0.578697 |
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Target: 5'- cGGCcgccuUGA-GCGUGGUCcaaGGGGCGCacUCCu -3' miRNA: 3'- aCCG-----ACUgCGUAUCAG---UUCCGCG--AGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 46302 | 0.68 | 0.578697 |
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Target: 5'- cUGGCUGugcGCGCGgaAGUCAGcGaGCGC-CCa -3' miRNA: 3'- -ACCGAC---UGCGUa-UCAGUU-C-CGCGaGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 46643 | 0.71 | 0.39299 |
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Target: 5'- gGGCaGACGUGUugccAGUgaugcCGAGGCGCUUCg -3' miRNA: 3'- aCCGaCUGCGUA----UCA-----GUUCCGCGAGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 47013 | 1.13 | 0.000491 |
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Target: 5'- gUGGCUGACGCAUAGUCAAGGCGCUCCa -3' miRNA: 3'- -ACCGACUGCGUAUCAGUUCCGCGAGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 47736 | 0.68 | 0.599874 |
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Target: 5'- gGGCgcgGuGCGCGUAgcGUCGcaauucgacggccAGGCGCUCg -3' miRNA: 3'- aCCGa--C-UGCGUAU--CAGU-------------UCCGCGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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