Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 2770 | 0.66 | 0.690463 |
|
Target: 5'- cUGGCcgGAaGCAggcAG-CGGcGGCGCUCCa -3' miRNA: 3'- -ACCGa-CUgCGUa--UCaGUU-CCGCGAGG- -5' |
|||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 630 | 0.67 | 0.668219 |
|
Target: 5'- gGGUUG-UGCugcGcCAAGGCGCUCg -3' miRNA: 3'- aCCGACuGCGuauCaGUUCCGCGAGg -5' |
|||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 31827 | 0.67 | 0.657039 |
|
Target: 5'- gUGGCUcACGCcug--CGcAGGUGCUCCg -3' miRNA: 3'- -ACCGAcUGCGuaucaGU-UCCGCGAGG- -5' |
|||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 45598 | 0.67 | 0.645834 |
|
Target: 5'- cGGCgGGCGCGccGUCGAcGCGCcguggUCCu -3' miRNA: 3'- aCCGaCUGCGUauCAGUUcCGCG-----AGG- -5' |
|||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 2730 | 0.67 | 0.623397 |
|
Target: 5'- cGGCUGGCaGCGcgcgCgAAGGCGCUgCCc -3' miRNA: 3'- aCCGACUG-CGUaucaG-UUCCGCGA-GG- -5' |
|||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 45240 | 0.68 | 0.600992 |
|
Target: 5'- cGGCUGACGCucagcGUAacccgccgcgcGUCAGcGGCguccugcgucuGCUCCa -3' miRNA: 3'- aCCGACUGCG-----UAU-----------CAGUU-CCG-----------CGAGG- -5' |
|||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 45913 | 0.68 | 0.578697 |
|
Target: 5'- cGGCcgccuUGA-GCGUGGUCcaaGGGGCGCacUCCu -3' miRNA: 3'- aCCG-----ACUgCGUAUCAG---UUCCGCG--AGG- -5' |
|||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 47013 | 1.13 | 0.000491 |
|
Target: 5'- gUGGCUGACGCAUAGUCAAGGCGCUCCa -3' miRNA: 3'- -ACCGACUGCGUAUCAGUUCCGCGAGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home