Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 2770 | 0.66 | 0.690463 |
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Target: 5'- cUGGCcgGAaGCAggcAG-CGGcGGCGCUCCa -3' miRNA: 3'- -ACCGa-CUgCGUa--UCaGUU-CCGCGAGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 11884 | 0.66 | 0.690463 |
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Target: 5'- cGcCUGagcGCGCcgAGuUCAuggccAGGCGCUCCa -3' miRNA: 3'- aCcGAC---UGCGuaUC-AGU-----UCCGCGAGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 41151 | 0.66 | 0.694887 |
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Target: 5'- cUGGCcgGAUGCcuccaacggcuaccUGGgCAAGGgGCUCCa -3' miRNA: 3'- -ACCGa-CUGCGu-------------AUCaGUUCCgCGAGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 43891 | 0.66 | 0.71138 |
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Target: 5'- gGGCguagacgUGGCGCAccGUCGcGGCGCcaggCCc -3' miRNA: 3'- aCCG-------ACUGCGUauCAGUuCCGCGa---GG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 828 | 0.66 | 0.712473 |
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Target: 5'- cGGCcugUGGCGCAaGGUgAAGGCauacgGCgCCa -3' miRNA: 3'- aCCG---ACUGCGUaUCAgUUCCG-----CGaGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 8149 | 0.66 | 0.712473 |
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Target: 5'- -aGCgccGCGCAUcaggcgaacgAGUCAAGGUGCUUg -3' miRNA: 3'- acCGac-UGCGUA----------UCAGUUCCGCGAGg -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 40775 | 0.66 | 0.712473 |
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Target: 5'- gUGGCUGACGU-UGG-CGGacggcaccccGGCGC-CCa -3' miRNA: 3'- -ACCGACUGCGuAUCaGUU----------CCGCGaGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 43587 | 0.66 | 0.723361 |
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Target: 5'- cGGCgccACgGCAgaGGUCGcAGGCGCUgCCa -3' miRNA: 3'- aCCGac-UG-CGUa-UCAGU-UCCGCGA-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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