Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11411 | 5' | -54.6 | NC_003085.1 | + | 43431 | 0.69 | 0.513172 |
Target: 5'- aGGUcauccUGGCGCGgcGUCcGGGCGUacaUCCg -3' miRNA: 3'- aCCG-----ACUGCGUauCAGuUCCGCG---AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 28858 | 0.69 | 0.530386 |
Target: 5'- cGGCUGACGCucaccuuGGGCGUUUg -3' miRNA: 3'- aCCGACUGCGuaucaguUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 35372 | 0.69 | 0.532553 |
Target: 5'- uUGGUaGACGUucucccggcggAGUcCGAGGCGCUCg -3' miRNA: 3'- -ACCGaCUGCGua---------UCA-GUUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 11407 | 0.69 | 0.534723 |
Target: 5'- cGGCUGACGCAccGcCGcgguGGCuGCUUCu -3' miRNA: 3'- aCCGACUGCGUauCaGUu---CCG-CGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 13914 | 0.69 | 0.534723 |
Target: 5'- cGGCgUGcGCGCGUuucGGaCGGGGCGCgcgCCg -3' miRNA: 3'- aCCG-AC-UGCGUA---UCaGUUCCGCGa--GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 39731 | 0.69 | 0.545619 |
Target: 5'- cUGGacuccaUGACGCcgAGgacaCAcAGGCGUUCCg -3' miRNA: 3'- -ACCg-----ACUGCGuaUCa---GU-UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 45913 | 0.68 | 0.578697 |
Target: 5'- cGGCcgccuUGA-GCGUGGUCcaaGGGGCGCacUCCu -3' miRNA: 3'- aCCG-----ACUgCGUAUCAG---UUCCGCG--AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 46302 | 0.68 | 0.578697 |
Target: 5'- cUGGCUGugcGCGCGgaAGUCAGcGaGCGC-CCa -3' miRNA: 3'- -ACCGAC---UGCGUa-UCAGUU-C-CGCGaGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 47736 | 0.68 | 0.599874 |
Target: 5'- gGGCgcgGuGCGCGUAgcGUCGcaauucgacggccAGGCGCUCg -3' miRNA: 3'- aCCGa--C-UGCGUAU--CAGU-------------UCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 40332 | 0.68 | 0.600992 |
Target: 5'- gGGCUGGCGCGUGccUCAguGGGCGgUg- -3' miRNA: 3'- aCCGACUGCGUAUc-AGU--UCCGCgAgg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 45240 | 0.68 | 0.600992 |
Target: 5'- cGGCUGACGCucagcGUAacccgccgcgcGUCAGcGGCguccugcgucuGCUCCa -3' miRNA: 3'- aCCGACUGCG-----UAU-----------CAGUU-CCG-----------CGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 13616 | 0.67 | 0.612186 |
Target: 5'- aGGCacaagUGGgGCAcgacugAGUCGcAGGCGCUCg -3' miRNA: 3'- aCCG-----ACUgCGUa-----UCAGU-UCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 12775 | 0.67 | 0.612186 |
Target: 5'- gGGgUGAUGCcccugccgccGUuGUCGggcAGGUGCUCCa -3' miRNA: 3'- aCCgACUGCG----------UAuCAGU---UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 2730 | 0.67 | 0.623397 |
Target: 5'- cGGCUGGCaGCGcgcgCgAAGGCGCUgCCc -3' miRNA: 3'- aCCGACUG-CGUaucaG-UUCCGCGA-GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 8245 | 0.67 | 0.645834 |
Target: 5'- aGGCUGAgCGCAgcgAGUUccggAGGGUGCcaugagCCc -3' miRNA: 3'- aCCGACU-GCGUa--UCAG----UUCCGCGa-----GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 45598 | 0.67 | 0.645834 |
Target: 5'- cGGCgGGCGCGccGUCGAcGCGCcguggUCCu -3' miRNA: 3'- aCCGaCUGCGUauCAGUUcCGCG-----AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 31827 | 0.67 | 0.657039 |
Target: 5'- gUGGCUcACGCcug--CGcAGGUGCUCCg -3' miRNA: 3'- -ACCGAcUGCGuaucaGU-UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 33109 | 0.67 | 0.657039 |
Target: 5'- cUGGgUGGCGCu--GUCGAa-CGCUCCc -3' miRNA: 3'- -ACCgACUGCGuauCAGUUccGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 630 | 0.67 | 0.668219 |
Target: 5'- gGGUUG-UGCugcGcCAAGGCGCUCg -3' miRNA: 3'- aCCGACuGCGuauCaGUUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 41810 | 0.67 | 0.668219 |
Target: 5'- aGGCUcGCGCAU-GUC--GGCGCcgCCc -3' miRNA: 3'- aCCGAcUGCGUAuCAGuuCCGCGa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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