Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11411 | 5' | -54.6 | NC_003085.1 | + | 28439 | 0.71 | 0.38747 |
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Target: 5'- aGGCUGgacauaccgccgccaGgGCGUGGaUUGAGGCGCUCa -3' miRNA: 3'- aCCGAC---------------UgCGUAUC-AGUUCCGCGAGg -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 23408 | 0.72 | 0.365906 |
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Target: 5'- aGGCUGA-GCAgcgAGUCAugcaGCGCUUCg -3' miRNA: 3'- aCCGACUgCGUa--UCAGUuc--CGCGAGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 38147 | 0.72 | 0.340138 |
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Target: 5'- -uGCUGGCGU-UGGUgGuGGCGCUCCc -3' miRNA: 3'- acCGACUGCGuAUCAgUuCCGCGAGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 12021 | 0.73 | 0.31571 |
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Target: 5'- gUGGCgGGCGCGgGGUU--GGCGCUCg -3' miRNA: 3'- -ACCGaCUGCGUaUCAGuuCCGCGAGg -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 38248 | 0.73 | 0.300173 |
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Target: 5'- gGGCUGACGguUGcacGUCAuGGCGUgCCu -3' miRNA: 3'- aCCGACUGCguAU---CAGUuCCGCGaGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 18970 | 0.76 | 0.219269 |
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Target: 5'- cUGGCUGuCGUcgAGUCcAGGCGUcgcgUCCa -3' miRNA: 3'- -ACCGACuGCGuaUCAGuUCCGCG----AGG- -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 632 | 0.89 | 0.024814 |
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Target: 5'- aGGCUGGCGCGgaccucGUCGAGGCGCUCg -3' miRNA: 3'- aCCGACUGCGUau----CAGUUCCGCGAGg -5' |
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| 11411 | 5' | -54.6 | NC_003085.1 | + | 47013 | 1.13 | 0.000491 |
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Target: 5'- gUGGCUGACGCAUAGUCAAGGCGCUCCa -3' miRNA: 3'- -ACCGACUGCGUAUCAGUUCCGCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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