miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 12102 0.68 0.549816
Target:  5'- -uGACG-CGCGcaagucgGACGCccCCGAGGCCUu -3'
miRNA:   3'- ugUUGUaGCGC-------UUGCGa-GGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 29556 0.68 0.540155
Target:  5'- aGCAACcaggccaaCGCGGACGuCUUCGGcGGCCUc -3'
miRNA:   3'- -UGUUGua------GCGCUUGC-GAGGCU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 11777 0.68 0.540155
Target:  5'- uACGGCggCGCc-GCGCUCCGGGcgugucggcuGCCCc -3'
miRNA:   3'- -UGUUGuaGCGcuUGCGAGGCUC----------CGGG- -5'
11415 5' -55.5 NC_003085.1 + 13268 0.69 0.533746
Target:  5'- cCAGCAg-GC-AGCGCUCCGcacggcgaacaucggAGGCCCc -3'
miRNA:   3'- uGUUGUagCGcUUGCGAGGC---------------UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 48158 0.69 0.529489
Target:  5'- cGCGGCGUCGCGcucACGCUugaggauuUCGGcgcgcacgagguGGCCCa -3'
miRNA:   3'- -UGUUGUAGCGCu--UGCGA--------GGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14409 0.69 0.529489
Target:  5'- aGC-GCAUCGCcuuggaGAUGCUCCGcgagggcuGGCCCu -3'
miRNA:   3'- -UGuUGUAGCGc-----UUGCGAGGCu-------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 46729 0.69 0.5189
Target:  5'- gGCAGCGccuUCGCGcGCGCUgCCaGccGCCCg -3'
miRNA:   3'- -UGUUGU---AGCGCuUGCGA-GG-CucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 2348 0.69 0.508397
Target:  5'- uGCGACAUC-CGGgagGCGCagUgCGAGGCCg -3'
miRNA:   3'- -UGUUGUAGcGCU---UGCG--AgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 34449 0.69 0.507352
Target:  5'- gGCGACGUCGgccagcaUGAGCGuCUCUGGGacgcuGCCCu -3'
miRNA:   3'- -UGUUGUAGC-------GCUUGC-GAGGCUC-----CGGG- -5'
11415 5' -55.5 NC_003085.1 + 28699 0.69 0.497985
Target:  5'- gACAACG-CGCGGA-GCUgCGcgcuGGCCCu -3'
miRNA:   3'- -UGUUGUaGCGCUUgCGAgGCu---CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 21758 0.69 0.497985
Target:  5'- uACGACGUgGCGAGCaUUCU--GGCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUUGcGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 2735 0.67 0.638435
Target:  5'- gGCAGCGcgCGCGAagGCGCugcccaaggacUCCGcuGGCCg -3'
miRNA:   3'- -UGUUGUa-GCGCU--UGCG-----------AGGCu-CCGGg -5'
11415 5' -55.5 NC_003085.1 + 37206 0.67 0.649451
Target:  5'- uGCAccgGUCGCGcaugaacuCGUUCCGcauGGGCCCa -3'
miRNA:   3'- -UGUug-UAGCGCuu------GCGAGGC---UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 41365 0.67 0.649451
Target:  5'- cCAACuUCGCGGcgugauguuGCGCUCCGcucauguaccGGCCa -3'
miRNA:   3'- uGUUGuAGCGCU---------UGCGAGGCu---------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 15027 0.66 0.660451
Target:  5'- cCGACGUCGCcg--GCUCCGAguuuuggcuGGCCg -3'
miRNA:   3'- uGUUGUAGCGcuugCGAGGCU---------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 19453 0.66 0.671424
Target:  5'- gACGACGUCGCcaaGGcCGC-CCaGGGCCg -3'
miRNA:   3'- -UGUUGUAGCG---CUuGCGaGGcUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 6151 0.66 0.692163
Target:  5'- gGCGACAUgGCGGGacugguggaccugUGCUCCau-GCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUU-------------GCGAGGcucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 1861 0.66 0.693249
Target:  5'- -aAACAggCGCGGcuccgucuuGCGCUCaucGGCCCa -3'
miRNA:   3'- ugUUGUa-GCGCU---------UGCGAGgcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 10464 0.66 0.693249
Target:  5'- cGCGACGUaGCGGGCucgaauCUgCGGGGCCg -3'
miRNA:   3'- -UGUUGUAgCGCUUGc-----GAgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 45659 1.1 0.0007
Target:  5'- cACAACAUCGCGAACGCUCCGAGGCCCc -3'
miRNA:   3'- -UGUUGUAGCGCUUGCGAGGCUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.