miRNA display CGI


Results 41 - 60 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 21758 0.69 0.497985
Target:  5'- uACGACGUgGCGAGCaUUCU--GGCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUUGcGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 21939 0.73 0.297625
Target:  5'- cCGGCAUCGCcagcuucagcagggGGugGCUCCGuuGGCUCa -3'
miRNA:   3'- uGUUGUAGCG--------------CUugCGAGGCu-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 22437 0.67 0.594411
Target:  5'- gGCAGCGUCGaGcGCGCaggcacaCCaAGGCCCg -3'
miRNA:   3'- -UGUUGUAGCgCuUGCGa------GGcUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 22900 0.67 0.649451
Target:  5'- uGCGACuccgGCGGAgGCUgCCGGGGCg- -3'
miRNA:   3'- -UGUUGuag-CGCUUgCGA-GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 23288 0.69 0.5189
Target:  5'- -uGACAUCaGCGGACGCauaCG-GGUCCg -3'
miRNA:   3'- ugUUGUAG-CGCUUGCGag-GCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 23439 0.68 0.550893
Target:  5'- cCAGCAggCGCagcagGGACGCaugaCgGAGGCCCa -3'
miRNA:   3'- uGUUGUa-GCG-----CUUGCGa---GgCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 24279 0.67 0.591123
Target:  5'- cGCAACucgaccugcucgaggCGCGGAUGaaugucgCCGAGGCCa -3'
miRNA:   3'- -UGUUGua-------------GCGCUUGCga-----GGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 25899 0.76 0.192816
Target:  5'- aGCGACAUCGC-AACGCcgcgCCGAGcagcGCCCu -3'
miRNA:   3'- -UGUUGUAGCGcUUGCGa---GGCUC----CGGG- -5'
11415 5' -55.5 NC_003085.1 + 26423 0.7 0.434806
Target:  5'- gGCGGCAgcuucgcccacugcUCGCGAAC-CUCUGGGcGCCa -3'
miRNA:   3'- -UGUUGU--------------AGCGCUUGcGAGGCUC-CGGg -5'
11415 5' -55.5 NC_003085.1 + 26820 0.71 0.381841
Target:  5'- gGCAAUGUCuuGCcGGCGCUCCuGGGuGCCCu -3'
miRNA:   3'- -UGUUGUAG--CGcUUGCGAGG-CUC-CGGG- -5'
11415 5' -55.5 NC_003085.1 + 28699 0.69 0.497985
Target:  5'- gACAACG-CGCGGA-GCUgCGcgcuGGCCCu -3'
miRNA:   3'- -UGUUGUaGCGCUUgCGAgGCu---CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 28967 0.67 0.616395
Target:  5'- cCAACA--GUGGACGCa--GGGGCCCa -3'
miRNA:   3'- uGUUGUagCGCUUGCGaggCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 29232 0.68 0.561695
Target:  5'- -gGACucaGCGAGgGCagCGAGGCCUa -3'
miRNA:   3'- ugUUGuagCGCUUgCGagGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 29556 0.68 0.540155
Target:  5'- aGCAACcaggccaaCGCGGACGuCUUCGGcGGCCUc -3'
miRNA:   3'- -UGUUGua------GCGCUUGC-GAGGCU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 30022 0.66 0.682361
Target:  5'- gGCGACGUCGUccGCgGCuUCCaGGGCCa -3'
miRNA:   3'- -UGUUGUAGCGcuUG-CG-AGGcUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 30366 0.72 0.364302
Target:  5'- gACAGCGaaGCGggUGCggcgcacuccgUCCG-GGCCCg -3'
miRNA:   3'- -UGUUGUagCGCuuGCG-----------AGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32069 0.67 0.627413
Target:  5'- gACAGCAaUGCGGAC-CUgagCCGAGGCg- -3'
miRNA:   3'- -UGUUGUaGCGCUUGcGA---GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 32437 0.68 0.550893
Target:  5'- -gGGCGUCGUuggaccGAACGC-CCGcGGCCUc -3'
miRNA:   3'- ugUUGUAGCG------CUUGCGaGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32820 0.67 0.605392
Target:  5'- aGCGGCuGUCGCGAcUGa-UUGGGGCCCg -3'
miRNA:   3'- -UGUUG-UAGCGCUuGCgaGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32916 0.72 0.364302
Target:  5'- uCGACGUCGCGAAUGCggcaCGGcgaccGGCUCa -3'
miRNA:   3'- uGUUGUAGCGCUUGCGag--GCU-----CCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.