miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 11777 0.68 0.540155
Target:  5'- uACGGCggCGCc-GCGCUCCGGGcgugucggcuGCCCc -3'
miRNA:   3'- -UGUUGuaGCGcuUGCGAGGCUC----------CGGG- -5'
11415 5' -55.5 NC_003085.1 + 11832 0.69 0.508397
Target:  5'- aACAGCAaacgucguguUCGCGAACGCg--GAGGCg- -3'
miRNA:   3'- -UGUUGU----------AGCGCUUGCGaggCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 11879 0.67 0.594411
Target:  5'- --uGCAUCGCcuGAGCGCgCCGAguucauGGCCa -3'
miRNA:   3'- uguUGUAGCG--CUUGCGaGGCU------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 12102 0.68 0.549816
Target:  5'- -uGACG-CGCGcaagucgGACGCccCCGAGGCCUu -3'
miRNA:   3'- ugUUGUaGCGC-------UUGCGa-GGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 12193 0.68 0.571466
Target:  5'- gGCGACGUCgagcgcuucccgGCGAACuggaagggaugggGCUCCaaggcuGGGCCCa -3'
miRNA:   3'- -UGUUGUAG------------CGCUUG-------------CGAGGc-----UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 13268 0.69 0.533746
Target:  5'- cCAGCAg-GC-AGCGCUCCGcacggcgaacaucggAGGCCCc -3'
miRNA:   3'- uGUUGUagCGcUUGCGAGGC---------------UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14409 0.69 0.529489
Target:  5'- aGC-GCAUCGCcuuggaGAUGCUCCGcgagggcuGGCCCu -3'
miRNA:   3'- -UGuUGUAGCGc-----UUGCGAGGCu-------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14449 0.69 0.487669
Target:  5'- uACGGCuAUCGuCGAGCGCUUCGcGGaauuCCCu -3'
miRNA:   3'- -UGUUG-UAGC-GCUUGCGAGGCuCC----GGG- -5'
11415 5' -55.5 NC_003085.1 + 14943 0.68 0.583462
Target:  5'- cCAAC-UCGCGGaacuGCGCgaagcgCUGcGGCCCa -3'
miRNA:   3'- uGUUGuAGCGCU----UGCGa-----GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 15027 0.66 0.660451
Target:  5'- cCGACGUCGCcg--GCUCCGAguuuuggcuGGCCg -3'
miRNA:   3'- uGUUGUAGCGcuugCGAGGCU---------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 16972 0.66 0.660451
Target:  5'- cACGAgAU----GACGCUCCG-GGCCCg -3'
miRNA:   3'- -UGUUgUAgcgcUUGCGAGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 17583 0.67 0.594411
Target:  5'- cACGGCAUCGCGGACgaGCUCguagGAGGaCg -3'
miRNA:   3'- -UGUUGUAGCGCUUG--CGAGg---CUCCgGg -5'
11415 5' -55.5 NC_003085.1 + 17669 0.69 0.529489
Target:  5'- ---cCGUCGCGAGCGg-CCG-GGCCg -3'
miRNA:   3'- uguuGUAGCGCUUGCgaGGCuCCGGg -5'
11415 5' -55.5 NC_003085.1 + 19040 0.66 0.661549
Target:  5'- gGCuGCGUCGUGGagauuccgcgGCGCgcggcggagcaggcgCCG-GGCCCg -3'
miRNA:   3'- -UGuUGUAGCGCU----------UGCGa--------------GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 19453 0.66 0.671424
Target:  5'- gACGACGUCGCcaaGGcCGC-CCaGGGCCg -3'
miRNA:   3'- -UGUUGUAGCG---CUuGCGaGGcUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 19551 0.67 0.638435
Target:  5'- cCAGCAaccccuggcguUCGuCGAGgGUgCCGAGGCCa -3'
miRNA:   3'- uGUUGU-----------AGC-GCUUgCGaGGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 19667 0.66 0.682361
Target:  5'- gGCAGCAUCuacgGCG-AC-CUCCuGGcGGCCCu -3'
miRNA:   3'- -UGUUGUAG----CGCuUGcGAGG-CU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20260 0.7 0.457351
Target:  5'- uCAGCAggCGCGuGCGCUCCGc-GUCCu -3'
miRNA:   3'- uGUUGUa-GCGCuUGCGAGGCucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20627 0.68 0.572554
Target:  5'- cCGGCGcuUCGCGGACGCggacgaugaCGuGGCUCg -3'
miRNA:   3'- uGUUGU--AGCGCUUGCGag-------GCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20933 0.68 0.572554
Target:  5'- gACGACGcCGCGGAuuCGCcCUGAcGGUCCa -3'
miRNA:   3'- -UGUUGUaGCGCUU--GCGaGGCU-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.