miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 35495 0.68 0.583462
Target:  5'- -gAGCAa--CGGGCGCUUCG-GGCCCa -3'
miRNA:   3'- ugUUGUagcGCUUGCGAGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 35209 0.67 0.627413
Target:  5'- gACGGCAaugCGCccGGACuCUCCGAuGGCCg -3'
miRNA:   3'- -UGUUGUa--GCG--CUUGcGAGGCU-CCGGg -5'
11415 5' -55.5 NC_003085.1 + 34984 0.67 0.627413
Target:  5'- gAUGACcUCGUGcgcACGCUgcuggCCGAGGCUCu -3'
miRNA:   3'- -UGUUGuAGCGCu--UGCGA-----GGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 34539 0.71 0.390818
Target:  5'- cACAGCGgcCGCGAGCGCcaCCagccGGCCCg -3'
miRNA:   3'- -UGUUGUa-GCGCUUGCGa-GGcu--CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 34449 0.69 0.507352
Target:  5'- gGCGACGUCGgccagcaUGAGCGuCUCUGGGacgcuGCCCu -3'
miRNA:   3'- -UGUUGUAGC-------GCUUGC-GAGGCUC-----CGGG- -5'
11415 5' -55.5 NC_003085.1 + 34303 0.72 0.339057
Target:  5'- -gAGCGUCGCGGGCaggGCaCCGAGGCguCCa -3'
miRNA:   3'- ugUUGUAGCGCUUG---CGaGGCUCCG--GG- -5'
11415 5' -55.5 NC_003085.1 + 34179 0.69 0.488696
Target:  5'- cCAGCAUgaCGCGGGCGCggcgggugagcucggCCGcGGCCUc -3'
miRNA:   3'- uGUUGUA--GCGCUUGCGa--------------GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 33823 0.74 0.244596
Target:  5'- aGCAAUGUUGUGGACGCUcuccgcCCGGccaccGGCCCa -3'
miRNA:   3'- -UGUUGUAGCGCUUGCGA------GGCU-----CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 33072 0.7 0.447471
Target:  5'- uGCuGCAUCGCcaGGACGUgcccgCgGAGGCUCa -3'
miRNA:   3'- -UGuUGUAGCG--CUUGCGa----GgCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32916 0.72 0.364302
Target:  5'- uCGACGUCGCGAAUGCggcaCGGcgaccGGCUCa -3'
miRNA:   3'- uGUUGUAGCGCUUGCGag--GCU-----CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32820 0.67 0.605392
Target:  5'- aGCGGCuGUCGCGAcUGa-UUGGGGCCCg -3'
miRNA:   3'- -UGUUG-UAGCGCUuGCgaGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32437 0.68 0.550893
Target:  5'- -gGGCGUCGUuggaccGAACGC-CCGcGGCCUc -3'
miRNA:   3'- ugUUGUAGCG------CUUGCGaGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32069 0.67 0.627413
Target:  5'- gACAGCAaUGCGGAC-CUgagCCGAGGCg- -3'
miRNA:   3'- -UGUUGUaGCGCUUGcGA---GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 30366 0.72 0.364302
Target:  5'- gACAGCGaaGCGggUGCggcgcacuccgUCCG-GGCCCg -3'
miRNA:   3'- -UGUUGUagCGCuuGCG-----------AGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 30022 0.66 0.682361
Target:  5'- gGCGACGUCGUccGCgGCuUCCaGGGCCa -3'
miRNA:   3'- -UGUUGUAGCGcuUG-CG-AGGcUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 29556 0.68 0.540155
Target:  5'- aGCAACcaggccaaCGCGGACGuCUUCGGcGGCCUc -3'
miRNA:   3'- -UGUUGua------GCGCUUGC-GAGGCU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 29232 0.68 0.561695
Target:  5'- -gGACucaGCGAGgGCagCGAGGCCUa -3'
miRNA:   3'- ugUUGuagCGCUUgCGagGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 28967 0.67 0.616395
Target:  5'- cCAACA--GUGGACGCa--GGGGCCCa -3'
miRNA:   3'- uGUUGUagCGCUUGCGaggCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 28699 0.69 0.497985
Target:  5'- gACAACG-CGCGGA-GCUgCGcgcuGGCCCu -3'
miRNA:   3'- -UGUUGUaGCGCUUgCGAgGCu---CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 26820 0.71 0.381841
Target:  5'- gGCAAUGUCuuGCcGGCGCUCCuGGGuGCCCu -3'
miRNA:   3'- -UGUUGUAG--CGcUUGCGAGG-CUC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.