miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 48806 0.69 0.529489
Target:  5'- gGCGACGUC-CGGGCgguGCUCgagcgccucgaCGAGGUCCg -3'
miRNA:   3'- -UGUUGUAGcGCUUG---CGAG-----------GCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 48742 0.67 0.620801
Target:  5'- gGCGACugaggCGCGGGuggaccugcucaggcCGCgcCCGAGGCCg -3'
miRNA:   3'- -UGUUGua---GCGCUU---------------GCGa-GGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 48657 0.75 0.214533
Target:  5'- gGCGGCA-CGCGGACGUccaCCGuGGCCUg -3'
miRNA:   3'- -UGUUGUaGCGCUUGCGa--GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 48158 0.69 0.529489
Target:  5'- cGCGGCGUCGCGcucACGCUugaggauuUCGGcgcgcacgagguGGCCCa -3'
miRNA:   3'- -UGUUGUAGCGCu--UGCGA--------GGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 46729 0.69 0.5189
Target:  5'- gGCAGCGccuUCGCGcGCGCUgCCaGccGCCCg -3'
miRNA:   3'- -UGUUGU---AGCGCuUGCGA-GG-CucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 45659 1.1 0.0007
Target:  5'- cACAACAUCGCGAACGCUCCGAGGCCCc -3'
miRNA:   3'- -UGUUGUAGCGCUUGCGAGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 45596 0.69 0.508397
Target:  5'- gACGGCGggCGCGccgucGACGCgCCGuGGUCCu -3'
miRNA:   3'- -UGUUGUa-GCGC-----UUGCGaGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 45529 0.71 0.381841
Target:  5'- gACAACAUCGCcgcGGCGCUCggcuuccaguuCGAGGCg- -3'
miRNA:   3'- -UGUUGUAGCGc--UUGCGAG-----------GCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 45375 0.72 0.339057
Target:  5'- aGCGGCGagUGCGGGCGCUCCaccagGAGGCg- -3'
miRNA:   3'- -UGUUGUa-GCGCUUGCGAGG-----CUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 43824 0.71 0.381841
Target:  5'- cGCAagucACAggGCGAGCGCUCC-AGcaGCCCg -3'
miRNA:   3'- -UGU----UGUagCGCUUGCGAGGcUC--CGGG- -5'
11415 5' -55.5 NC_003085.1 + 43443 0.69 0.5189
Target:  5'- cGCGGCGUC-CGGGCGUacaUCCGc-GCCCa -3'
miRNA:   3'- -UGUUGUAGcGCUUGCG---AGGCucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 43318 0.68 0.58237
Target:  5'- gGCgAGCAUCGUGAGucCGuCUCCGccugaaccccaggAGGUCCa -3'
miRNA:   3'- -UG-UUGUAGCGCUU--GC-GAGGC-------------UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 43212 0.66 0.693249
Target:  5'- gGCGGCGUCGUGuagGCGUcgaccaugUCgGAGcGCCUg -3'
miRNA:   3'- -UGUUGUAGCGCu--UGCG--------AGgCUC-CGGG- -5'
11415 5' -55.5 NC_003085.1 + 41365 0.67 0.649451
Target:  5'- cCAACuUCGCGGcgugauguuGCGCUCCGcucauguaccGGCCa -3'
miRNA:   3'- uGUUGuAGCGCU---------UGCGAGGCu---------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 39602 0.68 0.550893
Target:  5'- aGC-GCGUCGCgGAGCGCaCCGAgcagguGGCCg -3'
miRNA:   3'- -UGuUGUAGCG-CUUGCGaGGCU------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 38729 0.66 0.704079
Target:  5'- gGCAgaACGUCGUcAGCGCggCUGuAGGCaCCa -3'
miRNA:   3'- -UGU--UGUAGCGcUUGCGa-GGC-UCCG-GG- -5'
11415 5' -55.5 NC_003085.1 + 37206 0.67 0.649451
Target:  5'- uGCAccgGUCGCGcaugaacuCGUUCCGcauGGGCCCa -3'
miRNA:   3'- -UGUug-UAGCGCuu------GCGAGGC---UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 36678 0.66 0.704079
Target:  5'- --cACAUagGCGGGCGCcggauUCCG-GGCCUg -3'
miRNA:   3'- uguUGUAg-CGCUUGCG-----AGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 35961 0.7 0.418563
Target:  5'- uCGACGuUCGCcgcugccACGuCUCCGAGGUCCa -3'
miRNA:   3'- uGUUGU-AGCGcu-----UGC-GAGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 35784 0.67 0.638435
Target:  5'- ----uGUCGCGcacuCGCUCCGucuGGCaCCg -3'
miRNA:   3'- uguugUAGCGCuu--GCGAGGCu--CCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.