miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 45659 1.1 0.0007
Target:  5'- cACAACAUCGCGAACGCUCCGAGGCCCc -3'
miRNA:   3'- -UGUUGUAGCGCUUGCGAGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 25899 0.76 0.192816
Target:  5'- aGCGACAUCGC-AACGCcgcgCCGAGcagcGCCCu -3'
miRNA:   3'- -UGUUGUAGCGcUUGCGa---GGCUC----CGGG- -5'
11415 5' -55.5 NC_003085.1 + 48657 0.75 0.214533
Target:  5'- gGCGGCA-CGCGGACGUccaCCGuGGCCUg -3'
miRNA:   3'- -UGUUGUaGCGCUUGCGa--GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 33823 0.74 0.244596
Target:  5'- aGCAAUGUUGUGGACGCUcuccgcCCGGccaccGGCCCa -3'
miRNA:   3'- -UGUUGUAGCGCUUGCGA------GGCU-----CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 21939 0.73 0.297625
Target:  5'- cCGGCAUCGCcagcuucagcagggGGugGCUCCGuuGGCUCa -3'
miRNA:   3'- uGUUGUAGCG--------------CUugCGAGGCu-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 34303 0.72 0.339057
Target:  5'- -gAGCGUCGCGGGCaggGCaCCGAGGCguCCa -3'
miRNA:   3'- ugUUGUAGCGCUUG---CGaGGCUCCG--GG- -5'
11415 5' -55.5 NC_003085.1 + 6665 0.72 0.339057
Target:  5'- cCAAC-UCGUGGACGcCUCCcuGAuGGCCCu -3'
miRNA:   3'- uGUUGuAGCGCUUGC-GAGG--CU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 45375 0.72 0.339057
Target:  5'- aGCGGCGagUGCGGGCGCUCCaccagGAGGCg- -3'
miRNA:   3'- -UGUUGUa-GCGCUUGCGAGG-----CUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 7777 0.72 0.364302
Target:  5'- cCAuCGUCGCGGcgaGCGCaUUCGcGGCCCa -3'
miRNA:   3'- uGUuGUAGCGCU---UGCG-AGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32916 0.72 0.364302
Target:  5'- uCGACGUCGCGAAUGCggcaCGGcgaccGGCUCa -3'
miRNA:   3'- uGUUGUAGCGCUUGCGag--GCU-----CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 30366 0.72 0.364302
Target:  5'- gACAGCGaaGCGggUGCggcgcacuccgUCCG-GGCCCg -3'
miRNA:   3'- -UGUUGUagCGCuuGCG-----------AGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 11001 0.71 0.379174
Target:  5'- cGCGGCAUCGCGAGuugcuggaagaacuCGUcgaccgCCGAgacaGGCCCg -3'
miRNA:   3'- -UGUUGUAGCGCUU--------------GCGa-----GGCU----CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 45529 0.71 0.381841
Target:  5'- gACAACAUCGCcgcGGCGCUCggcuuccaguuCGAGGCg- -3'
miRNA:   3'- -UGUUGUAGCGc--UUGCGAG-----------GCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 26820 0.71 0.381841
Target:  5'- gGCAAUGUCuuGCcGGCGCUCCuGGGuGCCCu -3'
miRNA:   3'- -UGUUGUAG--CGcUUGCGAGG-CUC-CGGG- -5'
11415 5' -55.5 NC_003085.1 + 43824 0.71 0.381841
Target:  5'- cGCAagucACAggGCGAGCGCUCC-AGcaGCCCg -3'
miRNA:   3'- -UGU----UGUagCGCUUGCGAGGcUC--CGGG- -5'
11415 5' -55.5 NC_003085.1 + 34539 0.71 0.390818
Target:  5'- cACAGCGgcCGCGAGCGCcaCCagccGGCCCg -3'
miRNA:   3'- -UGUUGUa-GCGCUUGCGa-GGcu--CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 3574 0.71 0.409181
Target:  5'- gGCGGCAagCGCGccuCGCUgCCGAGGCg- -3'
miRNA:   3'- -UGUUGUa-GCGCuu-GCGA-GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 227 0.71 0.409181
Target:  5'- gACGACGUCauGCGGACugccuguaaGCUCuucauCGAGGCCUa -3'
miRNA:   3'- -UGUUGUAG--CGCUUG---------CGAG-----GCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 35961 0.7 0.418563
Target:  5'- uCGACGuUCGCcgcugccACGuCUCCGAGGUCCa -3'
miRNA:   3'- uGUUGU-AGCGcu-----UGC-GAGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 26423 0.7 0.434806
Target:  5'- gGCGGCAgcuucgcccacugcUCGCGAAC-CUCUGGGcGCCa -3'
miRNA:   3'- -UGUUGU--------------AGCGCUUGcGAGGCUC-CGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.