miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 33072 0.7 0.447471
Target:  5'- uGCuGCAUCGCcaGGACGUgcccgCgGAGGCUCa -3'
miRNA:   3'- -UGuUGUAGCG--CUUGCGa----GgCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20260 0.7 0.457351
Target:  5'- uCAGCAggCGCGuGCGCUCCGc-GUCCu -3'
miRNA:   3'- uGUUGUa-GCGCuUGCGAGGCucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 8492 0.7 0.457351
Target:  5'- uGCcGC-UUGCGAGCGCUggCGGGGCCa -3'
miRNA:   3'- -UGuUGuAGCGCUUGCGAg-GCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 6040 0.69 0.487669
Target:  5'- cACGACGaCGCG-ACGCUCUGuGGGCg- -3'
miRNA:   3'- -UGUUGUaGCGCuUGCGAGGC-UCCGgg -5'
11415 5' -55.5 NC_003085.1 + 14449 0.69 0.487669
Target:  5'- uACGGCuAUCGuCGAGCGCUUCGcGGaauuCCCu -3'
miRNA:   3'- -UGUUG-UAGC-GCUUGCGAGGCuCC----GGG- -5'
11415 5' -55.5 NC_003085.1 + 2270 0.69 0.487669
Target:  5'- gGCcuCGUCGCGGACuucuucgcggGCUCCGGcagcacggcgcuGGCCUg -3'
miRNA:   3'- -UGuuGUAGCGCUUG----------CGAGGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 34179 0.69 0.488696
Target:  5'- cCAGCAUgaCGCGGGCGCggcgggugagcucggCCGcGGCCUc -3'
miRNA:   3'- uGUUGUA--GCGCUUGCGa--------------GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 28699 0.69 0.497985
Target:  5'- gACAACG-CGCGGA-GCUgCGcgcuGGCCCu -3'
miRNA:   3'- -UGUUGUaGCGCUUgCGAgGCu---CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 21758 0.69 0.497985
Target:  5'- uACGACGUgGCGAGCaUUCU--GGCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUUGcGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 34449 0.69 0.507352
Target:  5'- gGCGACGUCGgccagcaUGAGCGuCUCUGGGacgcuGCCCu -3'
miRNA:   3'- -UGUUGUAGC-------GCUUGC-GAGGCUC-----CGGG- -5'
11415 5' -55.5 NC_003085.1 + 45596 0.69 0.508397
Target:  5'- gACGGCGggCGCGccgucGACGCgCCGuGGUCCu -3'
miRNA:   3'- -UGUUGUa-GCGC-----UUGCGaGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 11832 0.69 0.508397
Target:  5'- aACAGCAaacgucguguUCGCGAACGCg--GAGGCg- -3'
miRNA:   3'- -UGUUGU----------AGCGCUUGCGaggCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 2348 0.69 0.508397
Target:  5'- uGCGACAUC-CGGgagGCGCagUgCGAGGCCg -3'
miRNA:   3'- -UGUUGUAGcGCU---UGCG--AgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 46729 0.69 0.5189
Target:  5'- gGCAGCGccuUCGCGcGCGCUgCCaGccGCCCg -3'
miRNA:   3'- -UGUUGU---AGCGCuUGCGA-GG-CucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 23288 0.69 0.5189
Target:  5'- -uGACAUCaGCGGACGCauaCG-GGUCCg -3'
miRNA:   3'- ugUUGUAG-CGCUUGCGag-GCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 43443 0.69 0.5189
Target:  5'- cGCGGCGUC-CGGGCGUacaUCCGc-GCCCa -3'
miRNA:   3'- -UGUUGUAGcGCUUGCG---AGGCucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 17669 0.69 0.529489
Target:  5'- ---cCGUCGCGAGCGg-CCG-GGCCg -3'
miRNA:   3'- uguuGUAGCGCUUGCgaGGCuCCGGg -5'
11415 5' -55.5 NC_003085.1 + 14409 0.69 0.529489
Target:  5'- aGC-GCAUCGCcuuggaGAUGCUCCGcgagggcuGGCCCu -3'
miRNA:   3'- -UGuUGUAGCGc-----UUGCGAGGCu-------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 48158 0.69 0.529489
Target:  5'- cGCGGCGUCGCGcucACGCUugaggauuUCGGcgcgcacgagguGGCCCa -3'
miRNA:   3'- -UGUUGUAGCGCu--UGCGA--------GGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 48806 0.69 0.529489
Target:  5'- gGCGACGUC-CGGGCgguGCUCgagcgccucgaCGAGGUCCg -3'
miRNA:   3'- -UGUUGUAGcGCUUG---CGAG-----------GCUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.