miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 28967 0.67 0.616395
Target:  5'- cCAACA--GUGGACGCa--GGGGCCCa -3'
miRNA:   3'- uGUUGUagCGCUUGCGaggCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 35209 0.67 0.627413
Target:  5'- gACGGCAaugCGCccGGACuCUCCGAuGGCCg -3'
miRNA:   3'- -UGUUGUa--GCG--CUUGcGAGGCU-CCGGg -5'
11415 5' -55.5 NC_003085.1 + 32069 0.67 0.627413
Target:  5'- gACAGCAaUGCGGAC-CUgagCCGAGGCg- -3'
miRNA:   3'- -UGUUGUaGCGCUUGcGA---GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 34984 0.67 0.627413
Target:  5'- gAUGACcUCGUGcgcACGCUgcuggCCGAGGCUCu -3'
miRNA:   3'- -UGUUGuAGCGCu--UGCGA-----GGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 22900 0.67 0.649451
Target:  5'- uGCGACuccgGCGGAgGCUgCCGGGGCg- -3'
miRNA:   3'- -UGUUGuag-CGCUUgCGA-GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 22437 0.67 0.594411
Target:  5'- gGCAGCGUCGaGcGCGCaggcacaCCaAGGCCCg -3'
miRNA:   3'- -UGUUGUAGCgCuUGCGa------GGcUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 3982 0.67 0.649451
Target:  5'- gGCcGCGcUUGCGAGCGCgacaCGGcacaguGGCCCa -3'
miRNA:   3'- -UGuUGU-AGCGCUUGCGag--GCU------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 37206 0.67 0.649451
Target:  5'- uGCAccgGUCGCGcaugaacuCGUUCCGcauGGGCCCa -3'
miRNA:   3'- -UGUug-UAGCGCuu------GCGAGGC---UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 2735 0.67 0.638435
Target:  5'- gGCAGCGcgCGCGAagGCGCugcccaaggacUCCGcuGGCCg -3'
miRNA:   3'- -UGUUGUa-GCGCU--UGCG-----------AGGCu-CCGGg -5'
11415 5' -55.5 NC_003085.1 + 35784 0.67 0.638435
Target:  5'- ----uGUCGCGcacuCGCUCCGucuGGCaCCg -3'
miRNA:   3'- uguugUAGCGCuu--GCGAGGCu--CCG-GG- -5'
11415 5' -55.5 NC_003085.1 + 19551 0.67 0.638435
Target:  5'- cCAGCAaccccuggcguUCGuCGAGgGUgCCGAGGCCa -3'
miRNA:   3'- uGUUGU-----------AGC-GCUUgCGaGGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 41365 0.67 0.649451
Target:  5'- cCAACuUCGCGGcgugauguuGCGCUCCGcucauguaccGGCCa -3'
miRNA:   3'- uGUUGuAGCGCU---------UGCGAGGCu---------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 17583 0.67 0.594411
Target:  5'- cACGGCAUCGCGGACgaGCUCguagGAGGaCg -3'
miRNA:   3'- -UGUUGUAGCGCUUG--CGAGg---CUCCgGg -5'
11415 5' -55.5 NC_003085.1 + 7938 0.68 0.550893
Target:  5'- cCAACucGUUGCGGauGCGUUCCauGGCCCu -3'
miRNA:   3'- uGUUG--UAGCGCU--UGCGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 23439 0.68 0.550893
Target:  5'- cCAGCAggCGCagcagGGACGCaugaCgGAGGCCCa -3'
miRNA:   3'- uGUUGUa-GCG-----CUUGCGa---GgCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 12193 0.68 0.571466
Target:  5'- gGCGACGUCgagcgcuucccgGCGAACuggaagggaugggGCUCCaaggcuGGGCCCa -3'
miRNA:   3'- -UGUUGUAG------------CGCUUG-------------CGAGGc-----UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 29232 0.68 0.561695
Target:  5'- -gGACucaGCGAGgGCagCGAGGCCUa -3'
miRNA:   3'- ugUUGuagCGCUUgCGagGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 39602 0.68 0.550893
Target:  5'- aGC-GCGUCGCgGAGCGCaCCGAgcagguGGCCg -3'
miRNA:   3'- -UGuUGUAGCG-CUUGCGaGGCU------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 32437 0.68 0.550893
Target:  5'- -gGGCGUCGUuggaccGAACGC-CCGcGGCCUc -3'
miRNA:   3'- ugUUGUAGCG------CUUGCGaGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20627 0.68 0.572554
Target:  5'- cCGGCGcuUCGCGGACGCggacgaugaCGuGGCUCg -3'
miRNA:   3'- uGUUGU--AGCGCUUGCGag-------GCuCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.