miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 16972 0.66 0.660451
Target:  5'- cACGAgAU----GACGCUCCG-GGCCCg -3'
miRNA:   3'- -UGUUgUAgcgcUUGCGAGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 15027 0.66 0.660451
Target:  5'- cCGACGUCGCcg--GCUCCGAguuuuggcuGGCCg -3'
miRNA:   3'- uGUUGUAGCGcuugCGAGGCU---------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 6151 0.66 0.692163
Target:  5'- gGCGACAUgGCGGGacugguggaccugUGCUCCau-GCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUU-------------GCGAGGcucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 11532 0.66 0.671424
Target:  5'- cCGGCcgCGCGuuCGUcgagcgCCGGGGCCa -3'
miRNA:   3'- uGUUGuaGCGCuuGCGa-----GGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 19453 0.66 0.671424
Target:  5'- gACGACGUCGCcaaGGcCGC-CCaGGGCCg -3'
miRNA:   3'- -UGUUGUAGCG---CUuGCGaGGcUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 19667 0.66 0.682361
Target:  5'- gGCAGCAUCuacgGCG-AC-CUCCuGGcGGCCCu -3'
miRNA:   3'- -UGUUGUAG----CGCuUGcGAGG-CU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 10464 0.66 0.693249
Target:  5'- cGCGACGUaGCGGGCucgaauCUgCGGGGCCg -3'
miRNA:   3'- -UGUUGUAgCGCUUGc-----GAgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 36678 0.66 0.704079
Target:  5'- --cACAUagGCGGGCGCcggauUCCG-GGCCUg -3'
miRNA:   3'- uguUGUAg-CGCUUGCG-----AGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 38729 0.66 0.704079
Target:  5'- gGCAgaACGUCGUcAGCGCggCUGuAGGCaCCa -3'
miRNA:   3'- -UGU--UGUAGCGcUUGCGa-GGC-UCCG-GG- -5'
11415 5' -55.5 NC_003085.1 + 30022 0.66 0.682361
Target:  5'- gGCGACGUCGUccGCgGCuUCCaGGGCCa -3'
miRNA:   3'- -UGUUGUAGCGcuUG-CG-AGGcUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 1861 0.66 0.693249
Target:  5'- -aAACAggCGCGGcuccgucuuGCGCUCaucGGCCCa -3'
miRNA:   3'- ugUUGUa-GCGCU---------UGCGAGgcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 10357 0.66 0.671424
Target:  5'- -aGGCAcCGCGGACGCUCCcucaacCCCg -3'
miRNA:   3'- ugUUGUaGCGCUUGCGAGGcucc--GGG- -5'
11415 5' -55.5 NC_003085.1 + 43212 0.66 0.693249
Target:  5'- gGCGGCGUCGUGuagGCGUcgaccaugUCgGAGcGCCUg -3'
miRNA:   3'- -UGUUGUAGCGCu--UGCG--------AGgCUC-CGGG- -5'
11415 5' -55.5 NC_003085.1 + 8941 0.66 0.670329
Target:  5'- uGCAGCG-CGUGGccaaccuGCGCUgggccaagggCCGcGGCCCg -3'
miRNA:   3'- -UGUUGUaGCGCU-------UGCGA----------GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 19040 0.66 0.661549
Target:  5'- gGCuGCGUCGUGGagauuccgcgGCGCgcggcggagcaggcgCCG-GGCCCg -3'
miRNA:   3'- -UGuUGUAGCGCU----------UGCGa--------------GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 22900 0.67 0.649451
Target:  5'- uGCGACuccgGCGGAgGCUgCCGGGGCg- -3'
miRNA:   3'- -UGUUGuag-CGCUUgCGA-GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 34984 0.67 0.627413
Target:  5'- gAUGACcUCGUGcgcACGCUgcuggCCGAGGCUCu -3'
miRNA:   3'- -UGUUGuAGCGCu--UGCGA-----GGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32069 0.67 0.627413
Target:  5'- gACAGCAaUGCGGAC-CUgagCCGAGGCg- -3'
miRNA:   3'- -UGUUGUaGCGCUUGcGA---GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 32820 0.67 0.605392
Target:  5'- aGCGGCuGUCGCGAcUGa-UUGGGGCCCg -3'
miRNA:   3'- -UGUUG-UAGCGCUuGCgaGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 35209 0.67 0.627413
Target:  5'- gACGGCAaugCGCccGGACuCUCCGAuGGCCg -3'
miRNA:   3'- -UGUUGUa--GCG--CUUGcGAGGCU-CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.