miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 227 0.71 0.409181
Target:  5'- gACGACGUCauGCGGACugccuguaaGCUCuucauCGAGGCCUa -3'
miRNA:   3'- -UGUUGUAG--CGCUUG---------CGAG-----GCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 966 0.67 0.616395
Target:  5'- -gGAgGUCGC-AGCGCUCaaCGAGGCgCu -3'
miRNA:   3'- ugUUgUAGCGcUUGCGAG--GCUCCGgG- -5'
11415 5' -55.5 NC_003085.1 + 1861 0.66 0.693249
Target:  5'- -aAACAggCGCGGcuccgucuuGCGCUCaucGGCCCa -3'
miRNA:   3'- ugUUGUa-GCGCU---------UGCGAGgcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 2270 0.69 0.487669
Target:  5'- gGCcuCGUCGCGGACuucuucgcggGCUCCGGcagcacggcgcuGGCCUg -3'
miRNA:   3'- -UGuuGUAGCGCUUG----------CGAGGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 2348 0.69 0.508397
Target:  5'- uGCGACAUC-CGGgagGCGCagUgCGAGGCCg -3'
miRNA:   3'- -UGUUGUAGcGCU---UGCG--AgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 2735 0.67 0.638435
Target:  5'- gGCAGCGcgCGCGAagGCGCugcccaaggacUCCGcuGGCCg -3'
miRNA:   3'- -UGUUGUa-GCGCU--UGCG-----------AGGCu-CCGGg -5'
11415 5' -55.5 NC_003085.1 + 3574 0.71 0.409181
Target:  5'- gGCGGCAagCGCGccuCGCUgCCGAGGCg- -3'
miRNA:   3'- -UGUUGUa-GCGCuu-GCGA-GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 3982 0.67 0.649451
Target:  5'- gGCcGCGcUUGCGAGCGCgacaCGGcacaguGGCCCa -3'
miRNA:   3'- -UGuUGU-AGCGCUUGCGag--GCU------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 6040 0.69 0.487669
Target:  5'- cACGACGaCGCG-ACGCUCUGuGGGCg- -3'
miRNA:   3'- -UGUUGUaGCGCuUGCGAGGC-UCCGgg -5'
11415 5' -55.5 NC_003085.1 + 6151 0.66 0.692163
Target:  5'- gGCGACAUgGCGGGacugguggaccugUGCUCCau-GCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUU-------------GCGAGGcucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 6665 0.72 0.339057
Target:  5'- cCAAC-UCGUGGACGcCUCCcuGAuGGCCCu -3'
miRNA:   3'- uGUUGuAGCGCUUGC-GAGG--CU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 7319 0.68 0.583462
Target:  5'- gACGGcCAUCGCGGAgGCggCUGAGGaCgCg -3'
miRNA:   3'- -UGUU-GUAGCGCUUgCGa-GGCUCC-GgG- -5'
11415 5' -55.5 NC_003085.1 + 7777 0.72 0.364302
Target:  5'- cCAuCGUCGCGGcgaGCGCaUUCGcGGCCCa -3'
miRNA:   3'- uGUuGUAGCGCU---UGCG-AGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 7938 0.68 0.550893
Target:  5'- cCAACucGUUGCGGauGCGUUCCauGGCCCu -3'
miRNA:   3'- uGUUG--UAGCGCU--UGCGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 8492 0.7 0.457351
Target:  5'- uGCcGC-UUGCGAGCGCUggCGGGGCCa -3'
miRNA:   3'- -UGuUGuAGCGCUUGCGAg-GCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 8941 0.66 0.670329
Target:  5'- uGCAGCG-CGUGGccaaccuGCGCUgggccaagggCCGcGGCCCg -3'
miRNA:   3'- -UGUUGUaGCGCU-------UGCGA----------GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 10357 0.66 0.671424
Target:  5'- -aGGCAcCGCGGACGCUCCcucaacCCCg -3'
miRNA:   3'- ugUUGUaGCGCUUGCGAGGcucc--GGG- -5'
11415 5' -55.5 NC_003085.1 + 10464 0.66 0.693249
Target:  5'- cGCGACGUaGCGGGCucgaauCUgCGGGGCCg -3'
miRNA:   3'- -UGUUGUAgCGCUUGc-----GAgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 11001 0.71 0.379174
Target:  5'- cGCGGCAUCGCGAGuugcuggaagaacuCGUcgaccgCCGAgacaGGCCCg -3'
miRNA:   3'- -UGUUGUAGCGCUU--------------GCGa-----GGCU----CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 11532 0.66 0.671424
Target:  5'- cCGGCcgCGCGuuCGUcgagcgCCGGGGCCa -3'
miRNA:   3'- uGUUGuaGCGCuuGCGa-----GGCUCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.