miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 21939 0.73 0.297625
Target:  5'- cCGGCAUCGCcagcuucagcagggGGugGCUCCGuuGGCUCa -3'
miRNA:   3'- uGUUGUAGCG--------------CUugCGAGGCu-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 48158 0.69 0.529489
Target:  5'- cGCGGCGUCGCGcucACGCUugaggauuUCGGcgcgcacgagguGGCCCa -3'
miRNA:   3'- -UGUUGUAGCGCu--UGCGA--------GGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14409 0.69 0.529489
Target:  5'- aGC-GCAUCGCcuuggaGAUGCUCCGcgagggcuGGCCCu -3'
miRNA:   3'- -UGuUGUAGCGc-----UUGCGAGGCu-------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 46729 0.69 0.5189
Target:  5'- gGCAGCGccuUCGCGcGCGCUgCCaGccGCCCg -3'
miRNA:   3'- -UGUUGU---AGCGCuUGCGA-GG-CucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 2348 0.69 0.508397
Target:  5'- uGCGACAUC-CGGgagGCGCagUgCGAGGCCg -3'
miRNA:   3'- -UGUUGUAGcGCU---UGCG--AgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 34449 0.69 0.507352
Target:  5'- gGCGACGUCGgccagcaUGAGCGuCUCUGGGacgcuGCCCu -3'
miRNA:   3'- -UGUUGUAGC-------GCUUGC-GAGGCUC-----CGGG- -5'
11415 5' -55.5 NC_003085.1 + 28699 0.69 0.497985
Target:  5'- gACAACG-CGCGGA-GCUgCGcgcuGGCCCu -3'
miRNA:   3'- -UGUUGUaGCGCUUgCGAgGCu---CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 21758 0.69 0.497985
Target:  5'- uACGACGUgGCGAGCaUUCU--GGCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUUGcGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 2270 0.69 0.487669
Target:  5'- gGCcuCGUCGCGGACuucuucgcggGCUCCGGcagcacggcgcuGGCCUg -3'
miRNA:   3'- -UGuuGUAGCGCUUG----------CGAGGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14449 0.69 0.487669
Target:  5'- uACGGCuAUCGuCGAGCGCUUCGcGGaauuCCCu -3'
miRNA:   3'- -UGUUG-UAGC-GCUUGCGAGGCuCC----GGG- -5'
11415 5' -55.5 NC_003085.1 + 33072 0.7 0.447471
Target:  5'- uGCuGCAUCGCcaGGACGUgcccgCgGAGGCUCa -3'
miRNA:   3'- -UGuUGUAGCG--CUUGCGa----GgCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 3574 0.71 0.409181
Target:  5'- gGCGGCAagCGCGccuCGCUgCCGAGGCg- -3'
miRNA:   3'- -UGUUGUa-GCGCuu-GCGA-GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 227 0.71 0.409181
Target:  5'- gACGACGUCauGCGGACugccuguaaGCUCuucauCGAGGCCUa -3'
miRNA:   3'- -UGUUGUAG--CGCUUG---------CGAG-----GCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 34539 0.71 0.390818
Target:  5'- cACAGCGgcCGCGAGCGCcaCCagccGGCCCg -3'
miRNA:   3'- -UGUUGUa-GCGCUUGCGa-GGcu--CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 11001 0.71 0.379174
Target:  5'- cGCGGCAUCGCGAGuugcuggaagaacuCGUcgaccgCCGAgacaGGCCCg -3'
miRNA:   3'- -UGUUGUAGCGCUU--------------GCGa-----GGCU----CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32916 0.72 0.364302
Target:  5'- uCGACGUCGCGAAUGCggcaCGGcgaccGGCUCa -3'
miRNA:   3'- uGUUGUAGCGCUUGCGag--GCU-----CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 7777 0.72 0.364302
Target:  5'- cCAuCGUCGCGGcgaGCGCaUUCGcGGCCCa -3'
miRNA:   3'- uGUuGUAGCGCU---UGCG-AGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 34303 0.72 0.339057
Target:  5'- -gAGCGUCGCGGGCaggGCaCCGAGGCguCCa -3'
miRNA:   3'- ugUUGUAGCGCUUG---CGaGGCUCCG--GG- -5'
11415 5' -55.5 NC_003085.1 + 6665 0.72 0.339057
Target:  5'- cCAAC-UCGUGGACGcCUCCcuGAuGGCCCu -3'
miRNA:   3'- uGUUGuAGCGCUUGC-GAGG--CU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 33823 0.74 0.244596
Target:  5'- aGCAAUGUUGUGGACGCUcuccgcCCGGccaccGGCCCa -3'
miRNA:   3'- -UGUUGUAGCGCUUGCGA------GGCU-----CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.