miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 43212 0.66 0.693249
Target:  5'- gGCGGCGUCGUGuagGCGUcgaccaugUCgGAGcGCCUg -3'
miRNA:   3'- -UGUUGUAGCGCu--UGCG--------AGgCUC-CGGG- -5'
11415 5' -55.5 NC_003085.1 + 20933 0.68 0.572554
Target:  5'- gACGACGcCGCGGAuuCGCcCUGAcGGUCCa -3'
miRNA:   3'- -UGUUGUaGCGCUU--GCGaGGCU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 17669 0.69 0.529489
Target:  5'- ---cCGUCGCGAGCGg-CCG-GGCCg -3'
miRNA:   3'- uguuGUAGCGCUUGCgaGGCuCCGGg -5'
11415 5' -55.5 NC_003085.1 + 45659 1.1 0.0007
Target:  5'- cACAACAUCGCGAACGCUCCGAGGCCCc -3'
miRNA:   3'- -UGUUGUAGCGCUUGCGAGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 19453 0.66 0.671424
Target:  5'- gACGACGUCGCcaaGGcCGC-CCaGGGCCg -3'
miRNA:   3'- -UGUUGUAGCG---CUuGCGaGGcUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 15027 0.66 0.660451
Target:  5'- cCGACGUCGCcg--GCUCCGAguuuuggcuGGCCg -3'
miRNA:   3'- uGUUGUAGCGcuugCGAGGCU---------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 37206 0.67 0.649451
Target:  5'- uGCAccgGUCGCGcaugaacuCGUUCCGcauGGGCCCa -3'
miRNA:   3'- -UGUug-UAGCGCuu------GCGAGGC---UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 2735 0.67 0.638435
Target:  5'- gGCAGCGcgCGCGAagGCGCugcccaaggacUCCGcuGGCCg -3'
miRNA:   3'- -UGUUGUa-GCGCU--UGCG-----------AGGCu-CCGGg -5'
11415 5' -55.5 NC_003085.1 + 48742 0.67 0.620801
Target:  5'- gGCGACugaggCGCGGGuggaccugcucaggcCGCgcCCGAGGCCg -3'
miRNA:   3'- -UGUUGua---GCGCUU---------------GCGa-GGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 43318 0.68 0.58237
Target:  5'- gGCgAGCAUCGUGAGucCGuCUCCGccugaaccccaggAGGUCCa -3'
miRNA:   3'- -UG-UUGUAGCGCUU--GC-GAGGC-------------UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 22437 0.67 0.594411
Target:  5'- gGCAGCGUCGaGcGCGCaggcacaCCaAGGCCCg -3'
miRNA:   3'- -UGUUGUAGCgCuUGCGa------GGcUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 19551 0.67 0.638435
Target:  5'- cCAGCAaccccuggcguUCGuCGAGgGUgCCGAGGCCa -3'
miRNA:   3'- uGUUGU-----------AGC-GCUUgCGaGGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 10464 0.66 0.693249
Target:  5'- cGCGACGUaGCGGGCucgaauCUgCGGGGCCg -3'
miRNA:   3'- -UGUUGUAgCGCUUGc-----GAgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 17583 0.67 0.594411
Target:  5'- cACGGCAUCGCGGACgaGCUCguagGAGGaCg -3'
miRNA:   3'- -UGUUGUAGCGCUUG--CGAGg---CUCCgGg -5'
11415 5' -55.5 NC_003085.1 + 1861 0.66 0.693249
Target:  5'- -aAACAggCGCGGcuccgucuuGCGCUCaucGGCCCa -3'
miRNA:   3'- ugUUGUa-GCGCU---------UGCGAGgcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 35784 0.67 0.638435
Target:  5'- ----uGUCGCGcacuCGCUCCGucuGGCaCCg -3'
miRNA:   3'- uguugUAGCGCuu--GCGAGGCu--CCG-GG- -5'
11415 5' -55.5 NC_003085.1 + 35495 0.68 0.583462
Target:  5'- -gAGCAa--CGGGCGCUUCG-GGCCCa -3'
miRNA:   3'- ugUUGUagcGCUUGCGAGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 48806 0.69 0.529489
Target:  5'- gGCGACGUC-CGGGCgguGCUCgagcgccucgaCGAGGUCCg -3'
miRNA:   3'- -UGUUGUAGcGCUUG---CGAG-----------GCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 6151 0.66 0.692163
Target:  5'- gGCGACAUgGCGGGacugguggaccugUGCUCCau-GCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUU-------------GCGAGGcucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 41365 0.67 0.649451
Target:  5'- cCAACuUCGCGGcgugauguuGCGCUCCGcucauguaccGGCCa -3'
miRNA:   3'- uGUUGuAGCGCU---------UGCGAGGCu---------CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.