miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 35784 0.67 0.638435
Target:  5'- ----uGUCGCGcacuCGCUCCGucuGGCaCCg -3'
miRNA:   3'- uguugUAGCGCuu--GCGAGGCu--CCG-GG- -5'
11415 5' -55.5 NC_003085.1 + 19551 0.67 0.638435
Target:  5'- cCAGCAaccccuggcguUCGuCGAGgGUgCCGAGGCCa -3'
miRNA:   3'- uGUUGU-----------AGC-GCUUgCGaGGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 34984 0.67 0.627413
Target:  5'- gAUGACcUCGUGcgcACGCUgcuggCCGAGGCUCu -3'
miRNA:   3'- -UGUUGuAGCGCu--UGCGA-----GGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32069 0.67 0.627413
Target:  5'- gACAGCAaUGCGGAC-CUgagCCGAGGCg- -3'
miRNA:   3'- -UGUUGUaGCGCUUGcGA---GGCUCCGgg -5'
11415 5' -55.5 NC_003085.1 + 35209 0.67 0.627413
Target:  5'- gACGGCAaugCGCccGGACuCUCCGAuGGCCg -3'
miRNA:   3'- -UGUUGUa--GCG--CUUGcGAGGCU-CCGGg -5'
11415 5' -55.5 NC_003085.1 + 48742 0.67 0.620801
Target:  5'- gGCGACugaggCGCGGGuggaccugcucaggcCGCgcCCGAGGCCg -3'
miRNA:   3'- -UGUUGua---GCGCUU---------------GCGa-GGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 28967 0.67 0.616395
Target:  5'- cCAACA--GUGGACGCa--GGGGCCCa -3'
miRNA:   3'- uGUUGUagCGCUUGCGaggCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 966 0.67 0.616395
Target:  5'- -gGAgGUCGC-AGCGCUCaaCGAGGCgCu -3'
miRNA:   3'- ugUUgUAGCGcUUGCGAG--GCUCCGgG- -5'
11415 5' -55.5 NC_003085.1 + 32820 0.67 0.605392
Target:  5'- aGCGGCuGUCGCGAcUGa-UUGGGGCCCg -3'
miRNA:   3'- -UGUUG-UAGCGCUuGCgaGGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 22437 0.67 0.594411
Target:  5'- gGCAGCGUCGaGcGCGCaggcacaCCaAGGCCCg -3'
miRNA:   3'- -UGUUGUAGCgCuUGCGa------GGcUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 17583 0.67 0.594411
Target:  5'- cACGGCAUCGCGGACgaGCUCguagGAGGaCg -3'
miRNA:   3'- -UGUUGUAGCGCUUG--CGAGg---CUCCgGg -5'
11415 5' -55.5 NC_003085.1 + 11879 0.67 0.594411
Target:  5'- --uGCAUCGCcuGAGCGCgCCGAguucauGGCCa -3'
miRNA:   3'- uguUGUAGCG--CUUGCGaGGCU------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 24279 0.67 0.591123
Target:  5'- cGCAACucgaccugcucgaggCGCGGAUGaaugucgCCGAGGCCa -3'
miRNA:   3'- -UGUUGua-------------GCGCUUGCga-----GGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 35495 0.68 0.583462
Target:  5'- -gAGCAa--CGGGCGCUUCG-GGCCCa -3'
miRNA:   3'- ugUUGUagcGCUUGCGAGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14943 0.68 0.583462
Target:  5'- cCAAC-UCGCGGaacuGCGCgaagcgCUGcGGCCCa -3'
miRNA:   3'- uGUUGuAGCGCU----UGCGa-----GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 7319 0.68 0.583462
Target:  5'- gACGGcCAUCGCGGAgGCggCUGAGGaCgCg -3'
miRNA:   3'- -UGUU-GUAGCGCUUgCGa-GGCUCC-GgG- -5'
11415 5' -55.5 NC_003085.1 + 43318 0.68 0.58237
Target:  5'- gGCgAGCAUCGUGAGucCGuCUCCGccugaaccccaggAGGUCCa -3'
miRNA:   3'- -UG-UUGUAGCGCUU--GC-GAGGC-------------UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20627 0.68 0.572554
Target:  5'- cCGGCGcuUCGCGGACGCggacgaugaCGuGGCUCg -3'
miRNA:   3'- uGUUGU--AGCGCUUGCGag-------GCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20933 0.68 0.572554
Target:  5'- gACGACGcCGCGGAuuCGCcCUGAcGGUCCa -3'
miRNA:   3'- -UGUUGUaGCGCUU--GCGaGGCU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 12193 0.68 0.571466
Target:  5'- gGCGACGUCgagcgcuucccgGCGAACuggaagggaugggGCUCCaaggcuGGGCCCa -3'
miRNA:   3'- -UGUUGUAG------------CGCUUG-------------CGAGGc-----UCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.