Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11415 | 5' | -55.5 | NC_003085.1 | + | 29232 | 0.68 | 0.561695 |
Target: 5'- -gGACucaGCGAGgGCagCGAGGCCUa -3' miRNA: 3'- ugUUGuagCGCUUgCGagGCUCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 7938 | 0.68 | 0.550893 |
Target: 5'- cCAACucGUUGCGGauGCGUUCCauGGCCCu -3' miRNA: 3'- uGUUG--UAGCGCU--UGCGAGGcuCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 39602 | 0.68 | 0.550893 |
Target: 5'- aGC-GCGUCGCgGAGCGCaCCGAgcagguGGCCg -3' miRNA: 3'- -UGuUGUAGCG-CUUGCGaGGCU------CCGGg -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 32437 | 0.68 | 0.550893 |
Target: 5'- -gGGCGUCGUuggaccGAACGC-CCGcGGCCUc -3' miRNA: 3'- ugUUGUAGCG------CUUGCGaGGCuCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 23439 | 0.68 | 0.550893 |
Target: 5'- cCAGCAggCGCagcagGGACGCaugaCgGAGGCCCa -3' miRNA: 3'- uGUUGUa-GCG-----CUUGCGa---GgCUCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 12102 | 0.68 | 0.549816 |
Target: 5'- -uGACG-CGCGcaagucgGACGCccCCGAGGCCUu -3' miRNA: 3'- ugUUGUaGCGC-------UUGCGa-GGCUCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 29556 | 0.68 | 0.540155 |
Target: 5'- aGCAACcaggccaaCGCGGACGuCUUCGGcGGCCUc -3' miRNA: 3'- -UGUUGua------GCGCUUGC-GAGGCU-CCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 11777 | 0.68 | 0.540155 |
Target: 5'- uACGGCggCGCc-GCGCUCCGGGcgugucggcuGCCCc -3' miRNA: 3'- -UGUUGuaGCGcuUGCGAGGCUC----------CGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 13268 | 0.69 | 0.533746 |
Target: 5'- cCAGCAg-GC-AGCGCUCCGcacggcgaacaucggAGGCCCc -3' miRNA: 3'- uGUUGUagCGcUUGCGAGGC---------------UCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 17669 | 0.69 | 0.529489 |
Target: 5'- ---cCGUCGCGAGCGg-CCG-GGCCg -3' miRNA: 3'- uguuGUAGCGCUUGCgaGGCuCCGGg -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 14409 | 0.69 | 0.529489 |
Target: 5'- aGC-GCAUCGCcuuggaGAUGCUCCGcgagggcuGGCCCu -3' miRNA: 3'- -UGuUGUAGCGc-----UUGCGAGGCu-------CCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 48806 | 0.69 | 0.529489 |
Target: 5'- gGCGACGUC-CGGGCgguGCUCgagcgccucgaCGAGGUCCg -3' miRNA: 3'- -UGUUGUAGcGCUUG---CGAG-----------GCUCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 48158 | 0.69 | 0.529489 |
Target: 5'- cGCGGCGUCGCGcucACGCUugaggauuUCGGcgcgcacgagguGGCCCa -3' miRNA: 3'- -UGUUGUAGCGCu--UGCGA--------GGCU------------CCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 43443 | 0.69 | 0.5189 |
Target: 5'- cGCGGCGUC-CGGGCGUacaUCCGc-GCCCa -3' miRNA: 3'- -UGUUGUAGcGCUUGCG---AGGCucCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 23288 | 0.69 | 0.5189 |
Target: 5'- -uGACAUCaGCGGACGCauaCG-GGUCCg -3' miRNA: 3'- ugUUGUAG-CGCUUGCGag-GCuCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 46729 | 0.69 | 0.5189 |
Target: 5'- gGCAGCGccuUCGCGcGCGCUgCCaGccGCCCg -3' miRNA: 3'- -UGUUGU---AGCGCuUGCGA-GG-CucCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 11832 | 0.69 | 0.508397 |
Target: 5'- aACAGCAaacgucguguUCGCGAACGCg--GAGGCg- -3' miRNA: 3'- -UGUUGU----------AGCGCUUGCGaggCUCCGgg -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 2348 | 0.69 | 0.508397 |
Target: 5'- uGCGACAUC-CGGgagGCGCagUgCGAGGCCg -3' miRNA: 3'- -UGUUGUAGcGCU---UGCG--AgGCUCCGGg -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 45596 | 0.69 | 0.508397 |
Target: 5'- gACGGCGggCGCGccgucGACGCgCCGuGGUCCu -3' miRNA: 3'- -UGUUGUa-GCGC-----UUGCGaGGCuCCGGG- -5' |
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11415 | 5' | -55.5 | NC_003085.1 | + | 34449 | 0.69 | 0.507352 |
Target: 5'- gGCGACGUCGgccagcaUGAGCGuCUCUGGGacgcuGCCCu -3' miRNA: 3'- -UGUUGUAGC-------GCUUGC-GAGGCUC-----CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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