miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 13268 0.69 0.533746
Target:  5'- cCAGCAg-GC-AGCGCUCCGcacggcgaacaucggAGGCCCc -3'
miRNA:   3'- uGUUGUagCGcUUGCGAGGC---------------UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 11777 0.68 0.540155
Target:  5'- uACGGCggCGCc-GCGCUCCGGGcgugucggcuGCCCc -3'
miRNA:   3'- -UGUUGuaGCGcuUGCGAGGCUC----------CGGG- -5'
11415 5' -55.5 NC_003085.1 + 29556 0.68 0.540155
Target:  5'- aGCAACcaggccaaCGCGGACGuCUUCGGcGGCCUc -3'
miRNA:   3'- -UGUUGua------GCGCUUGC-GAGGCU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 12102 0.68 0.549816
Target:  5'- -uGACG-CGCGcaagucgGACGCccCCGAGGCCUu -3'
miRNA:   3'- ugUUGUaGCGC-------UUGCGa-GGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 23439 0.68 0.550893
Target:  5'- cCAGCAggCGCagcagGGACGCaugaCgGAGGCCCa -3'
miRNA:   3'- uGUUGUa-GCG-----CUUGCGa---GgCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 39602 0.68 0.550893
Target:  5'- aGC-GCGUCGCgGAGCGCaCCGAgcagguGGCCg -3'
miRNA:   3'- -UGuUGUAGCG-CUUGCGaGGCU------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 32437 0.68 0.550893
Target:  5'- -gGGCGUCGUuggaccGAACGC-CCGcGGCCUc -3'
miRNA:   3'- ugUUGUAGCG------CUUGCGaGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 7938 0.68 0.550893
Target:  5'- cCAACucGUUGCGGauGCGUUCCauGGCCCu -3'
miRNA:   3'- uGUUG--UAGCGCU--UGCGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 29232 0.68 0.561695
Target:  5'- -gGACucaGCGAGgGCagCGAGGCCUa -3'
miRNA:   3'- ugUUGuagCGCUUgCGagGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 12193 0.68 0.571466
Target:  5'- gGCGACGUCgagcgcuucccgGCGAACuggaagggaugggGCUCCaaggcuGGGCCCa -3'
miRNA:   3'- -UGUUGUAG------------CGCUUG-------------CGAGGc-----UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20627 0.68 0.572554
Target:  5'- cCGGCGcuUCGCGGACGCggacgaugaCGuGGCUCg -3'
miRNA:   3'- uGUUGU--AGCGCUUGCGag-------GCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20933 0.68 0.572554
Target:  5'- gACGACGcCGCGGAuuCGCcCUGAcGGUCCa -3'
miRNA:   3'- -UGUUGUaGCGCUU--GCGaGGCU-CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 43318 0.68 0.58237
Target:  5'- gGCgAGCAUCGUGAGucCGuCUCCGccugaaccccaggAGGUCCa -3'
miRNA:   3'- -UG-UUGUAGCGCUU--GC-GAGGC-------------UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14943 0.68 0.583462
Target:  5'- cCAAC-UCGCGGaacuGCGCgaagcgCUGcGGCCCa -3'
miRNA:   3'- uGUUGuAGCGCU----UGCGa-----GGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 7319 0.68 0.583462
Target:  5'- gACGGcCAUCGCGGAgGCggCUGAGGaCgCg -3'
miRNA:   3'- -UGUU-GUAGCGCUUgCGa-GGCUCC-GgG- -5'
11415 5' -55.5 NC_003085.1 + 35495 0.68 0.583462
Target:  5'- -gAGCAa--CGGGCGCUUCG-GGCCCa -3'
miRNA:   3'- ugUUGUagcGCUUGCGAGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 24279 0.67 0.591123
Target:  5'- cGCAACucgaccugcucgaggCGCGGAUGaaugucgCCGAGGCCa -3'
miRNA:   3'- -UGUUGua-------------GCGCUUGCga-----GGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 22437 0.67 0.594411
Target:  5'- gGCAGCGUCGaGcGCGCaggcacaCCaAGGCCCg -3'
miRNA:   3'- -UGUUGUAGCgCuUGCGa------GGcUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 11879 0.67 0.594411
Target:  5'- --uGCAUCGCcuGAGCGCgCCGAguucauGGCCa -3'
miRNA:   3'- uguUGUAGCG--CUUGCGaGGCU------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 17583 0.67 0.594411
Target:  5'- cACGGCAUCGCGGACgaGCUCguagGAGGaCg -3'
miRNA:   3'- -UGUUGUAGCGCUUG--CGAGg---CUCCgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.